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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS06080 and LRK55_RS06085 are separated by 106 nucleotides
LRK55_RS06085 and LRK55_RS06090 are separated by 111 nucleotides
LRK55_RS06090 and LRK55_RS06095 are separated by 143 nucleotides
LRK55_RS06095 and LRK55_RS06100 are separated by 362 nucleotides
LRK55_RS06080: LRK55_RS06080 - ABATE domain-containing protein, at 1,306,249 to 1,306,857
_RS06080
LRK55_RS06085: LRK55_RS06085 - hypothetical protein, at 1,306,964 to 1,308,343
_RS06085
LRK55_RS06090: LRK55_RS06090 - VOC family protein, at 1,308,455 to 1,308,856
_RS06090
LRK55_RS06095: LRK55_RS06095 - tetratricopeptide repeat protein, at 1,309,000 to 1,310,118
_RS06095
LRK55_RS06100: LRK55_RS06100 - hypothetical protein, at 1,310,481 to 1,310,909
_RS06100
Group
Condition
LRK55
_RS06080
LRK55
_RS06085
LRK55
_RS06090
LRK55
_RS06095
LRK55
_RS06100
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.7
+0.0
+0.1
+0.0
-0.5
pH
R2A_PIPES pH 4.5
-0.3
+0.1
-0.3
-0.1
-0.5
stress
R2A with Nickel (II) chloride 1696 uM
+0.2
-0.0
-0.1
-0.3
-0.5
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
-0.0
-0.0
-0.3
-0.2
pH
R2A_PIPES pH 4.25
-0.4
+0.1
+0.1
-0.1
-0.4
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.0
-0.1
-0.4
-0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
-0.1
+0.1
-0.1
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
+0.1
-0.4
+0.1
-0.1
no stress control
no stress control
-0.3
+0.1
-0.0
+0.0
-0.2
stress
R2A with Zinc chloride 2560 uM
-0.1
+0.1
-0.1
-0.1
-0.1
stress
R2A with Zinc chloride 2560 uM
+0.0
+0.1
+0.0
-0.2
-0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.2
+0.1
-0.3
-0.1
-0.2
no stress control
no stress control
-0.0
+0.1
-0.3
+0.0
-0.1
pH
R2A_PIPES pH 4.5
+0.1
+0.0
+0.0
-0.1
-0.3
no stress control
no stress control
-0.1
+0.2
-0.1
-0.1
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.1
+0.0
-0.0
-0.0
-0.1
no stress control
no stress control
-0.2
+0.1
-0.0
-0.0
-0.1
no stress control
no stress control
+0.2
-0.0
-0.2
-0.0
-0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
-0.0
+0.0
+0.1
-0.0
no stress control
no stress control
+0.2
-0.0
+0.3
-0.1
-0.2
pH
R2A_PIPES pH 4.25
-0.2
+0.2
+0.1
+0.2
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
+0.1
-0.0
+0.1
+0.2
no stress control
no stress control
+0.3
+0.2
+0.0
+0.0
-0.1
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