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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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5
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS05955 and LRK55_RS05960 are separated by 2 nucleotides
LRK55_RS05960 and LRK55_RS05965 are separated by 46 nucleotides
LRK55_RS05965 and LRK55_RS05970 overlap by 6 nucleotides
LRK55_RS05970 and LRK55_RS05975 are separated by 232 nucleotides
LRK55_RS05955: LRK55_RS05955 - hypothetical protein, at 1,283,870 to 1,284,391
_RS05955
LRK55_RS05960: LRK55_RS05960 - YciI family protein, at 1,284,394 to 1,284,768
_RS05960
LRK55_RS05965: LRK55_RS05965 - tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO, at 1,284,815 to 1,285,378
_RS05965
LRK55_RS05970: LRK55_RS05970 - hypothetical protein, at 1,285,373 to 1,285,618
_RS05970
LRK55_RS05975: LRK55_RS05975 - L,D-transpeptidase family protein, at 1,285,851 to 1,287,494
_RS05975
Group
Condition
LRK55
_RS05955
LRK55
_RS05960
LRK55
_RS05965
LRK55
_RS05970
LRK55
_RS05975
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
-0.7
+0.2
-0.6
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
+0.2
-0.3
-0.9
-0.1
no stress control
no stress control
-0.0
-0.3
+0.2
-0.7
-0.0
no stress control
no stress control
-0.3
-0.0
-0.0
-0.1
-0.3
stress
R2A with Nickel (II) chloride 1696 uM
+0.0
+0.2
+0.5
-1.7
+0.2
no stress control
no stress control
-0.4
+0.2
-0.2
-0.2
-0.1
no stress control
no stress control
+0.6
-0.0
-0.3
-0.6
-0.3
no stress control
no stress control
-0.4
+0.2
-0.1
-0.2
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.5
+0.4
+0.0
-0.0
-0.1
no stress control
no stress control
-0.6
+0.2
+0.2
-0.0
-0.1
pH
R2A_PIPES pH 4.25
-0.8
-0.2
+1.1
-0.5
+0.3
stress
R2A with Zinc chloride 2560 uM
+0.3
+0.4
-0.2
-0.7
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
+0.2
+0.5
-0.9
+0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.4
+0.6
-0.5
-0.4
+0.0
pH
R2A_PIPES pH 4.25
+0.3
-0.2
+1.0
-0.9
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.4
+0.1
-0.3
+0.2
+0.0
pH
R2A_PIPES pH 4.5
+0.2
-0.0
+0.3
-0.2
+0.1
stress
R2A with Zinc chloride 2560 uM
+0.2
-0.5
+0.5
+0.2
+0.2
no stress control
no stress control
+0.3
+0.6
+0.4
-0.5
+0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
+0.4
+0.4
+0.7
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.9
+0.6
+0.3
-0.5
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
+0.3
+0.2
+0.4
+0.3
+0.2
pH
R2A_PIPES pH 4.5
+0.5
-0.1
+0.5
+0.6
+0.1
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