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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS05605 and LRK55_RS05610 are separated by 109 nucleotides
LRK55_RS05610 and LRK55_RS05615 are separated by 87 nucleotides
LRK55_RS05615 and LRK55_RS05620 are separated by 167 nucleotides
LRK55_RS05620 and LRK55_RS05625 are separated by 106 nucleotides
LRK55_RS05605: LRK55_RS05605 - 4-hydroxyphenylpyruvate dioxygenase, at 1,215,107 to 1,216,192
_RS05605
LRK55_RS05610: LRK55_RS05610 - MarR family transcriptional regulator, at 1,216,302 to 1,216,763
_RS05610
LRK55_RS05615: LRK55_RS05615 - peptide MFS transporter, at 1,216,851 to 1,218,362
_RS05615
LRK55_RS05620: LRK55_RS05620 - peptide MFS transporter, at 1,218,530 to 1,220,038
_RS05620
LRK55_RS05625: LRK55_RS05625 - tryptophan 2,3-dioxygenase family protein, at 1,220,145 to 1,220,993
_RS05625
Group
Condition
LRK55
_RS05605
LRK55
_RS05610
LRK55
_RS05615
LRK55
_RS05620
LRK55
_RS05625
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
-3.8
-0.1
+0.1
-0.0
pH
R2A_PIPES pH 4.25
+0.7
-0.3
+0.4
+0.2
-2.0
no stress control
no stress control
+0.2
-1.6
+0.2
+0.2
+0.2
no stress control
no stress control
+0.1
-1.1
+0.0
+0.1
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
+0.4
-0.4
+0.1
+0.0
-0.9
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.3
-1.2
+0.1
+0.1
+0.0
no stress control
no stress control
+0.2
-1.0
+0.3
+0.1
+0.0
no stress control
no stress control
+0.2
+0.3
+0.1
+0.0
-1.0
stress
R2A with Zinc chloride 2560 uM
+0.8
-0.8
+0.2
-0.1
-0.5
stress
R2A with Zinc chloride 2560 uM
+0.9
-0.5
+0.2
-0.1
-0.6
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.2
-0.3
+0.0
+0.2
-0.1
no stress control
no stress control
+0.2
-0.5
+0.2
+0.1
+0.1
no stress control
no stress control
+0.2
-0.7
-0.0
+0.0
+0.6
pH
R2A_PIPES pH 4.5
+0.4
-0.3
+0.1
+0.1
-0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.4
-0.3
+0.0
+0.1
+0.4
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
+0.3
+0.1
+0.1
+0.2
no stress control
no stress control
+0.2
+0.0
+0.1
+0.3
+0.4
pH
R2A_PIPES pH 4.5
+0.4
+0.7
+0.3
+0.0
-0.4
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.3
-0.2
+0.3
+0.4
+0.3
stress
R2A with Nickel (II) chloride 1696 uM
+0.3
+0.4
+0.1
-0.0
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.5
+0.4
-0.0
+0.1
+0.2
pH
R2A_PIPES pH 4.25
+0.7
+0.9
+0.5
-0.1
-0.5
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.3
+0.6
+0.2
+0.4
+0.5
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