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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS05590 and LRK55_RS05595 are separated by 100 nucleotides
LRK55_RS05595 and LRK55_RS05600 are separated by 37 nucleotides
LRK55_RS05600 and LRK55_RS05605 are separated by 11 nucleotides
LRK55_RS05605 and LRK55_RS05610 are separated by 109 nucleotides
LRK55_RS05590: LRK55_RS05590 - oxygen-independent coproporphyrinogen III oxidase, at 1,211,272 to 1,212,672
_RS05590
LRK55_RS05595: LRK55_RS05595 - fumarylacetoacetate hydrolase family protein, at 1,212,773 to 1,213,759
_RS05595
LRK55_RS05600: LRK55_RS05600 - homogentisate 1,2-dioxygenase, at 1,213,797 to 1,215,095
_RS05600
LRK55_RS05605: LRK55_RS05605 - 4-hydroxyphenylpyruvate dioxygenase, at 1,215,107 to 1,216,192
_RS05605
LRK55_RS05610: LRK55_RS05610 - MarR family transcriptional regulator, at 1,216,302 to 1,216,763
_RS05610
Group
Condition
LRK55
_RS05590
LRK55
_RS05595
LRK55
_RS05600
LRK55
_RS05605
LRK55
_RS05610
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.0
N.D.
-0.0
+0.1
-3.8
no stress control
no stress control
-0.0
N.D.
-0.1
+0.2
-1.6
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.0
N.D.
-0.2
+0.3
-1.2
no stress control
no stress control
-0.0
N.D.
-0.0
+0.1
-1.1
no stress control
no stress control
+0.2
N.D.
-0.0
+0.2
-1.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
N.D.
-0.4
+0.2
-0.3
no stress control
no stress control
+0.0
N.D.
-0.1
+0.2
-0.7
no stress control
no stress control
+0.0
N.D.
+0.0
+0.2
-0.5
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
N.D.
-0.2
+0.3
-0.2
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
N.D.
-0.3
+0.4
-0.4
no stress control
no stress control
-0.0
N.D.
-0.5
+0.2
+0.3
pH
R2A_PIPES pH 4.5
+0.0
N.D.
-0.2
+0.4
-0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.0
N.D.
-0.1
+0.4
-0.3
no stress control
no stress control
-0.0
N.D.
-0.1
+0.2
+0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
N.D.
-0.4
+0.2
+0.3
stress
R2A with Zinc chloride 2560 uM
+0.1
N.D.
+0.2
+0.8
-0.8
pH
R2A_PIPES pH 4.25
+0.1
N.D.
-0.0
+0.7
-0.3
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
N.D.
-0.2
+0.3
+0.4
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
N.D.
-0.1
+0.5
+0.4
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.0
N.D.
-0.1
+0.3
+0.6
stress
R2A with Zinc chloride 2560 uM
+0.2
N.D.
+0.3
+0.9
-0.5
pH
R2A_PIPES pH 4.5
-0.0
N.D.
-0.1
+0.4
+0.7
pH
R2A_PIPES pH 4.25
+0.2
N.D.
-0.3
+0.7
+0.9
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