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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS05325 and LRK55_RS05330 are separated by 115 nucleotides
LRK55_RS05330 and LRK55_RS05335 are separated by 7 nucleotides
LRK55_RS05335 and LRK55_RS05340 are separated by 31 nucleotides
LRK55_RS05340 and LRK55_RS05345 overlap by 4 nucleotides
LRK55_RS05325: LRK55_RS05325 - IS5 family transposase, at 1,155,344 to 1,156,385
_RS05325
LRK55_RS05330: LRK55_RS05330 - glycosyltransferase, at 1,156,501 to 1,157,517
_RS05330
LRK55_RS05335: LRK55_RS05335 - FAD-dependent oxidoreductase, at 1,157,525 to 1,158,649
_RS05335
LRK55_RS05340: LRK55_RS05340 - pyridine nucleotide transhydrogenase, at 1,158,681 to 1,159,475
_RS05340
LRK55_RS05345: LRK55_RS05345 - sugar phosphate isomerase/epimerase, at 1,159,472 to 1,160,308
_RS05345
Group
Condition
LRK55
_RS05325
LRK55
_RS05330
LRK55
_RS05335
LRK55
_RS05340
LRK55
_RS05345
pH
R2A_PIPES pH 4.5
-0.5
-0.5
-0.7
N.D.
N.D.
pH
R2A_PIPES pH 4.25
-0.1
-0.4
-0.6
N.D.
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
-0.4
-0.1
-0.5
N.D.
N.D.
pH
R2A_PIPES pH 4.5
-0.3
-0.2
-0.4
N.D.
N.D.
no stress control
no stress control
-0.4
-0.1
-0.4
N.D.
N.D.
no stress control
no stress control
-0.4
-0.1
-0.3
N.D.
N.D.
no stress control
no stress control
-0.4
-0.0
-0.3
N.D.
N.D.
pH
R2A_PIPES pH 4.25
-0.2
-0.2
-0.2
N.D.
N.D.
no stress control
no stress control
-0.2
-0.0
-0.3
N.D.
N.D.
no stress control
no stress control
-0.2
+0.0
-0.3
N.D.
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
-0.2
+0.1
-0.3
N.D.
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.0
+0.1
-0.5
N.D.
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.4
+0.1
-0.1
N.D.
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
+0.0
-0.2
N.D.
N.D.
no stress control
no stress control
-0.2
-0.0
-0.2
N.D.
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.3
+0.1
-0.2
N.D.
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
+0.1
-0.2
N.D.
N.D.
stress
R2A with Zinc chloride 2560 uM
-0.2
+0.2
-0.2
N.D.
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
+0.1
-0.1
N.D.
N.D.
no stress control
no stress control
-0.2
+0.1
-0.0
N.D.
N.D.
stress
R2A with Zinc chloride 2560 uM
-0.2
+0.3
-0.2
N.D.
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
+0.3
+0.2
N.D.
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
+0.8
+0.5
N.D.
N.D.
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