Fitness for 5 genes in Rhodanobacter denitrificans MT42

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Top 23 experiments (either direction), sorted by average fitness

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500 ntLRK55_RS05190 and LRK55_RS05195 are separated by 127 nucleotidesLRK55_RS05195 and LRK55_RS05200 are separated by 143 nucleotidesLRK55_RS05200 and LRK55_RS05205 overlap by 4 nucleotidesLRK55_RS05205 and LRK55_RS05210 are separated by 17 nucleotides LRK55_RS05190: LRK55_RS05190 - TetR/AcrR family transcriptional regulator, at 1,122,693 to 1,123,271 _RS05190 LRK55_RS05195: LRK55_RS05195 - phosphoenolpyruvate carboxykinase (GTP), at 1,123,399 to 1,125,183 _RS05195 LRK55_RS05200: LRK55_RS05200 - sigma-70 family RNA polymerase sigma factor, at 1,125,327 to 1,125,872 _RS05200 LRK55_RS05205: LRK55_RS05205 - hypothetical protein, at 1,125,869 to 1,126,321 _RS05205 LRK55_RS05210: LRK55_RS05210 - DUF4097 family beta strand repeat-containing protein, at 1,126,339 to 1,127,241 _RS05210
Group Condition LRK55_RS05190 LRK55_RS05195 LRK55_RS05200 LRK55_RS05205 LRK55_RS05210
no stress control no stress control -3.6 -0.1 -0.2 N.D. N.D.
no stress control no stress control -3.6 -0.3 +0.1 N.D. N.D.
stress R2A with Zinc chloride 2560 uM -3.3 -0.1 -0.3 N.D. N.D.
no stress control no stress control -3.6 -0.1 +0.1 N.D. N.D.
stress R2A_PIPES with Cadmium chloride 64 uM -3.3 -0.3 -0.1 N.D. N.D.
pH R2A_PIPES pH 4.5 -3.3 +0.0 -0.3 N.D. N.D.
stress R2A with Zinc chloride 2560 uM -3.2 -0.2 +0.0 N.D. N.D.
no stress control no stress control -2.9 -0.2 -0.2 N.D. N.D.
stress R2A_PIPES with Cadmium chloride 64 uM -3.3 -0.1 +0.1 N.D. N.D.
stress R2A_PIPES with Aluminum chloride 0.140625 mM -3.2 -0.2 +0.1 N.D. N.D.
no stress control no stress control -3.3 -0.1 +0.1 N.D. N.D.
stress R2A_PIPES with Aluminum chloride 0.140625 mM -3.4 -0.1 +0.3 N.D. N.D.
stress R2A with Nickel (II) chloride 1696 uM -3.3 -0.1 +0.2 N.D. N.D.
no stress control no stress control -3.4 -0.1 +0.4 N.D. N.D.
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -3.4 +0.0 +0.2 N.D. N.D.
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -3.3 +0.0 +0.2 N.D. N.D.
stress R2A with Nickel (II) chloride 1696 uM -3.0 -0.1 +0.0 N.D. N.D.
stress R2A with Metal_ion_mix_sitestressplate 2 x -3.1 +0.0 +0.1 N.D. N.D.
stress R2A with Metal_ion_mix_sitestressplate 2 x -3.1 -0.0 +0.2 N.D. N.D.
pH R2A_PIPES pH 4.5 -2.9 -0.1 +0.1 N.D. N.D.
pH R2A_PIPES pH 4.25 -2.8 -0.1 -0.0 N.D. N.D.
pH R2A_PIPES pH 4.25 -2.4 -0.1 -0.2 N.D. N.D.
no stress control no stress control -2.5 -0.1 +0.0 N.D. N.D.
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