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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS05025 and LRK55_RS05030 are separated by 119 nucleotides
LRK55_RS05030 and LRK55_RS05035 are separated by 75 nucleotides
LRK55_RS05035 and LRK55_RS05040 are separated by 110 nucleotides
LRK55_RS05040 and LRK55_RS05045 are separated by 92 nucleotides
LRK55_RS05025: LRK55_RS05025 - GTP-binding protein, at 1,079,680 to 1,081,038
_RS05025
LRK55_RS05030: LRK55_RS05030 - glutaredoxin family protein, at 1,081,158 to 1,081,388
_RS05030
LRK55_RS05035: LRK55_RS05035 - L-serine ammonia-lyase, at 1,081,464 to 1,082,846
_RS05035
LRK55_RS05040: LRK55_RS05040 - hypothetical protein, at 1,082,957 to 1,083,403
_RS05040
LRK55_RS05045: LRK55_RS05045 - site-specific DNA-methyltransferase, at 1,083,496 to 1,085,577
_RS05045
Group
Condition
LRK55
_RS05025
LRK55
_RS05030
LRK55
_RS05035
LRK55
_RS05040
LRK55
_RS05045
stress
R2A with Nickel (II) chloride 1696 uM
-0.2
-0.0
-0.1
-1.1
-0.3
pH
R2A_PIPES pH 4.5
+0.2
-0.5
-0.5
-0.5
-0.4
no stress control
no stress control
+0.1
-0.2
-0.3
-1.1
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.3
+0.4
-1.1
-1.0
-0.1
pH
R2A_PIPES pH 4.5
+0.0
-0.2
-0.3
-0.8
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.3
+0.4
-1.2
-0.9
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
+0.3
-0.2
-0.9
-0.2
stress
R2A with Nickel (II) chloride 1696 uM
+0.0
-0.2
-0.1
-0.7
-0.1
pH
R2A_PIPES pH 4.25
+0.1
+0.2
-0.6
-0.6
-0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.0
-0.2
-0.1
-0.5
-0.1
no stress control
no stress control
+0.3
-0.4
-0.2
-0.5
-0.2
stress
R2A with Zinc chloride 2560 uM
-0.0
-0.4
+0.3
-0.5
-0.3
no stress control
no stress control
-0.1
-0.2
-0.1
-0.4
-0.1
no stress control
no stress control
-0.1
-0.1
-0.3
-0.2
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
-0.4
+0.0
-0.2
-0.1
no stress control
no stress control
-0.0
+0.3
-0.3
-0.5
-0.2
stress
R2A with Zinc chloride 2560 uM
+0.1
+0.1
-0.1
-0.7
-0.3
no stress control
no stress control
-0.1
+0.1
-0.1
-0.4
-0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
-0.2
+0.1
-0.5
-0.1
no stress control
no stress control
+0.1
-0.1
-0.1
-0.2
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.3
+0.9
-0.4
-0.9
-0.2
pH
R2A_PIPES pH 4.25
+0.3
-0.3
-0.6
+0.6
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.0
+0.0
+0.1
-0.2
-0.1
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