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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS04920 and LRK55_RS04925 are separated by 10 nucleotides
LRK55_RS04925 and LRK55_RS04930 overlap by 4 nucleotides
LRK55_RS04930 and LRK55_RS04935 overlap by 4 nucleotides
LRK55_RS04935 and LRK55_RS04940 overlap by 4 nucleotides
LRK55_RS04920: LRK55_RS04920 - Wzz/FepE/Etk N-terminal domain-containing protein, at 1,059,712 to 1,060,530
_RS04920
LRK55_RS04925: LRK55_RS04925 - hypothetical protein, at 1,060,541 to 1,061,689
_RS04925
LRK55_RS04930: LRK55_RS04930 - glycosyltransferase, at 1,061,686 to 1,062,633
_RS04930
LRK55_RS04935: LRK55_RS04935 - O-antigen translocase, at 1,062,630 to 1,063,886
_RS04935
LRK55_RS04940: LRK55_RS04940 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 1,063,883 to 1,065,040
_RS04940
Group
Condition
LRK55
_RS04920
LRK55
_RS04925
LRK55
_RS04930
LRK55
_RS04935
LRK55
_RS04940
pH
R2A_PIPES pH 4.25
+0.1
-0.5
-1.3
-0.8
-0.5
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.0
-0.5
-1.0
-0.5
-0.4
stress
R2A with Zinc chloride 2560 uM
+0.1
-1.0
-0.4
-0.5
-0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.0
-0.3
-0.4
-0.3
-0.7
pH
R2A_PIPES pH 4.25
+0.1
-0.9
-0.2
-0.4
-0.4
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
-0.6
-0.2
-0.4
-0.2
no stress control
no stress control
+0.1
-0.4
-0.1
-0.4
-0.4
stress
R2A with Zinc chloride 2560 uM
+0.1
-0.3
-0.5
-0.5
+0.0
pH
R2A_PIPES pH 4.5
-0.0
-0.6
+0.1
-0.5
-0.1
no stress control
no stress control
+0.0
-0.4
-0.4
-0.2
-0.1
pH
R2A_PIPES pH 4.5
-0.0
-0.2
-0.4
-0.2
-0.2
no stress control
no stress control
-0.1
-0.4
-0.0
-0.3
-0.3
no stress control
no stress control
+0.1
-0.3
-0.3
-0.3
-0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
-0.4
-0.2
-0.2
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
-0.4
-0.4
-0.2
-0.1
no stress control
no stress control
+0.0
-0.3
-0.2
-0.3
-0.0
stress
R2A with Nickel (II) chloride 1696 uM
+0.2
-0.7
+0.3
-0.2
-0.3
no stress control
no stress control
+0.1
-0.1
-0.2
-0.3
-0.2
stress
R2A with Nickel (II) chloride 1696 uM
+0.3
-0.5
-0.1
-0.2
-0.0
no stress control
no stress control
-0.0
-0.3
+0.2
-0.2
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
-0.1
-0.0
-0.1
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.0
-0.2
-0.0
-0.0
+0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
+0.2
+0.2
-0.3
+0.1
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