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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS04830 and LRK55_RS04835 are separated by 181 nucleotides
LRK55_RS04835 and LRK55_RS04840 are separated by 1 nucleotides
LRK55_RS04840 and LRK55_RS04845 overlap by 4 nucleotides
LRK55_RS04845 and LRK55_RS04850 are separated by 25 nucleotides
LRK55_RS04830: LRK55_RS04830 - GH92 family glycosyl hydrolase, at 1,036,049 to 1,038,352
_RS04830
LRK55_RS04835: LRK55_RS04835 - L-fucose:H+ symporter permease, at 1,038,534 to 1,039,871
_RS04835
LRK55_RS04840: LRK55_RS04840 - carbohydrate kinase, at 1,039,873 to 1,040,853
_RS04840
LRK55_RS04845: LRK55_RS04845 - AGE family epimerase/isomerase, at 1,040,850 to 1,042,076
_RS04845
LRK55_RS04850: LRK55_RS04850 - M1 family aminopeptidase, at 1,042,102 to 1,044,072
_RS04850
Group
Condition
LRK55
_RS04830
LRK55
_RS04835
LRK55
_RS04840
LRK55
_RS04845
LRK55
_RS04850
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.2
+0.3
-0.9
-0.2
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
+0.1
-0.5
+0.2
-0.0
no stress control
no stress control
-0.2
+0.1
-0.2
-0.0
-0.2
no stress control
no stress control
-0.2
+0.0
+0.0
-0.1
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.3
+0.0
+0.1
-0.2
+0.0
stress
R2A with Nickel (II) chloride 1696 uM
-0.3
+0.2
-0.3
+0.1
-0.0
no stress control
no stress control
-0.3
+0.2
-0.2
-0.1
+0.0
stress
R2A with Zinc chloride 2560 uM
-0.4
+0.1
+0.1
-0.1
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
+0.1
-0.2
-0.0
-0.0
no stress control
no stress control
-0.2
+0.2
-0.3
-0.0
+0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.5
+0.4
+0.1
-0.3
-0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
+0.0
-0.0
+0.1
-0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.3
+0.1
-0.1
+0.2
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
+0.1
+0.1
-0.0
-0.1
no stress control
no stress control
-0.2
+0.1
+0.2
+0.1
-0.2
no stress control
no stress control
-0.2
+0.2
+0.1
+0.1
-0.1
stress
R2A with Zinc chloride 2560 uM
-0.4
+0.3
+0.3
+0.2
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
+0.2
+0.4
-0.0
+0.0
no stress control
no stress control
-0.1
+0.2
+0.4
+0.1
-0.1
pH
R2A_PIPES pH 4.25
-0.5
+0.7
+0.5
+0.1
-0.2
pH
R2A_PIPES pH 4.5
-0.6
+0.4
+0.7
+0.1
+0.0
pH
R2A_PIPES pH 4.25
-0.6
+0.8
-0.2
+0.5
+0.2
pH
R2A_PIPES pH 4.5
-0.4
+0.5
+0.6
+0.3
-0.0
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