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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS04500 and LRK55_RS04505 are separated by 101 nucleotides
LRK55_RS04505 and LRK55_RS04510 are separated by 223 nucleotides
LRK55_RS04510 and LRK55_RS04515 are separated by 72 nucleotides
LRK55_RS04515 and LRK55_RS04520 are separated by 51 nucleotides
LRK55_RS04500: LRK55_RS04500 - phosphoribosylformylglycinamidine synthase, at 955,296 to 959,159
_RS04500
LRK55_RS04505: LRK55_RS04505 - DsbC family protein, at 959,261 to 960,034
_RS04505
LRK55_RS04510: LRK55_RS04510 - Fe2+-dependent dioxygenase, at 960,258 to 960,932
_RS04510
LRK55_RS04515: LRK55_RS04515 - site-specific tyrosine recombinase XerD, at 961,005 to 961,922
_RS04515
LRK55_RS04520: LRK55_RS04520 - RDD family protein, at 961,974 to 962,477
_RS04520
Group
Condition
LRK55
_RS04500
LRK55
_RS04505
LRK55
_RS04510
LRK55
_RS04515
LRK55
_RS04520
stress
R2A with Nickel (II) chloride 1696 uM
-4.2
-0.2
-0.6
-1.9
-0.6
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-3.8
-0.2
-0.4
-1.9
-1.0
pH
R2A_PIPES pH 4.25
-3.3
-0.9
-0.7
-2.5
+0.4
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-4.2
-0.1
-0.1
-2.2
-0.5
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-3.6
-0.0
-0.0
-2.4
-0.9
stress
R2A with Zinc chloride 2560 uM
-4.1
+0.2
+0.0
-2.5
-0.4
pH
R2A_PIPES pH 4.25
-3.0
-0.7
+0.2
-2.5
-0.8
stress
R2A with Zinc chloride 2560 uM
-3.9
+0.1
-0.5
-2.1
-0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
-3.6
-0.2
-0.4
-2.0
-0.4
pH
R2A_PIPES pH 4.5
-4.3
-0.3
-0.0
-1.7
-0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-4.1
-0.1
-0.3
-1.8
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-3.8
-0.1
-0.4
-1.8
-0.3
no stress control
no stress control
-3.6
+0.0
-0.2
-2.5
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-3.6
-0.2
-0.1
-2.3
-0.2
no stress control
no stress control
-3.5
-0.0
-0.8
-1.8
-0.2
no stress control
no stress control
-4.1
-0.2
-0.4
-1.5
+0.0
pH
R2A_PIPES pH 4.5
-4.1
-0.1
-0.1
-1.5
-0.2
stress
R2A with Nickel (II) chloride 1696 uM
-4.3
+0.0
-0.3
-1.1
-0.4
stress
R2A_PIPES with Cadmium chloride 64 uM
-3.7
+0.1
-0.5
-2.0
+0.2
no stress control
no stress control
-3.7
+0.1
-0.3
-1.9
+0.0
no stress control
no stress control
-3.6
+0.1
-0.1
-1.5
-0.3
no stress control
no stress control
-3.3
+0.2
-0.4
-1.3
-0.1
no stress control
no stress control
-3.4
+0.1
-0.1
-1.4
-0.1
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