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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS04425 and LRK55_RS04430 are separated by 6 nucleotides
LRK55_RS04430 and LRK55_RS04435 overlap by 4 nucleotides
LRK55_RS04435 and LRK55_RS04440 are separated by 136 nucleotides
LRK55_RS04440 and LRK55_RS04445 are separated by 171 nucleotides
LRK55_RS04425: LRK55_RS04425 - DUF427 domain-containing protein, at 944,723 to 944,851
_RS04425
LRK55_RS04430: LRK55_RS04430 - DUF427 domain-containing protein, at 944,858 to 944,995
_RS04430
LRK55_RS04435: LRK55_RS04435 - peptide deformylase, at 944,992 to 945,531
_RS04435
LRK55_RS04440: LRK55_RS04440 - DUF4197 domain-containing protein, at 945,668 to 946,465
_RS04440
LRK55_RS04445: LRK55_RS04445 - carbon starvation CstA family protein, at 946,637 to 948,712
_RS04445
Group
Condition
LRK55
_RS04425
LRK55
_RS04430
LRK55
_RS04435
LRK55
_RS04440
LRK55
_RS04445
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.2
N.D.
-1.4
-0.0
-0.4
pH
R2A_PIPES pH 4.25
-0.4
N.D.
-0.6
-0.2
-0.5
no stress control
no stress control
-0.1
N.D.
-0.9
-0.0
-0.4
stress
R2A with Zinc chloride 2560 uM
+0.1
N.D.
-0.7
-0.3
-0.2
pH
R2A_PIPES pH 4.25
+0.0
N.D.
-0.1
-0.3
-0.5
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
N.D.
-0.1
-0.2
-0.3
stress
R2A with Zinc chloride 2560 uM
-0.0
N.D.
-0.6
-0.2
+0.0
pH
R2A_PIPES pH 4.5
-0.0
N.D.
-0.3
+0.0
-0.4
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.2
N.D.
-0.3
+0.0
-0.5
no stress control
no stress control
-0.1
N.D.
-0.1
+0.0
-0.3
no stress control
no stress control
-0.0
N.D.
-0.2
+0.1
-0.5
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.1
N.D.
-0.2
+0.2
-0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
N.D.
+0.2
-0.1
-0.3
pH
R2A_PIPES pH 4.5
+0.2
N.D.
+0.1
-0.2
-0.5
no stress control
no stress control
+0.2
N.D.
-0.0
-0.1
-0.4
stress
R2A with Nickel (II) chloride 1696 uM
+0.4
N.D.
-0.4
-0.1
-0.3
no stress control
no stress control
+0.1
N.D.
+0.0
-0.1
-0.3
stress
R2A with Nickel (II) chloride 1696 uM
+0.2
N.D.
+0.0
-0.3
-0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.2
N.D.
+0.2
-0.0
-0.3
no stress control
no stress control
+0.3
N.D.
+0.2
-0.0
-0.2
no stress control
no stress control
+0.2
N.D.
+0.3
-0.0
-0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
N.D.
+0.5
+0.1
-0.4
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
N.D.
+0.4
+0.2
-0.2
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