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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS04075 and LRK55_RS04080 are separated by 53 nucleotides
LRK55_RS04080 and LRK55_RS04085 overlap by 4 nucleotides
LRK55_RS04085 and LRK55_RS04090 are separated by 108 nucleotides
LRK55_RS04090 and LRK55_RS04095 are separated by 5 nucleotides
LRK55_RS04075: LRK55_RS04075 - SDR family oxidoreductase, at 864,724 to 865,557
_RS04075
LRK55_RS04080: LRK55_RS04080 - shikimate kinase, at 865,611 to 866,165
_RS04080
LRK55_RS04085: LRK55_RS04085 - 3-dehydroquinate synthase, at 866,162 to 867,253
_RS04085
LRK55_RS04090: LRK55_RS04090 - WGR domain-containing protein, at 867,362 to 867,622
_RS04090
LRK55_RS04095: LRK55_RS04095 - uroporphyrinogen decarboxylase, at 867,628 to 868,698
_RS04095
Group
Condition
LRK55
_RS04075
LRK55
_RS04080
LRK55
_RS04085
LRK55
_RS04090
LRK55
_RS04095
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
N.D.
N.D.
-2.2
N.D.
no stress control
no stress control
+0.2
N.D.
N.D.
-1.9
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
N.D.
N.D.
-1.7
N.D.
no stress control
no stress control
+0.1
N.D.
N.D.
-1.4
N.D.
stress
R2A with Zinc chloride 2560 uM
-0.0
N.D.
N.D.
-0.8
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
-0.0
N.D.
N.D.
-0.8
N.D.
stress
R2A with Zinc chloride 2560 uM
-0.0
N.D.
N.D.
-0.7
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
+0.2
N.D.
N.D.
-0.8
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
N.D.
N.D.
-0.3
N.D.
no stress control
no stress control
+0.2
N.D.
N.D.
-0.6
N.D.
no stress control
no stress control
+0.1
N.D.
N.D.
-0.5
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
N.D.
N.D.
-0.5
N.D.
no stress control
no stress control
+0.3
N.D.
N.D.
-0.6
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.3
N.D.
N.D.
-0.5
N.D.
no stress control
no stress control
+0.2
N.D.
N.D.
-0.4
N.D.
no stress control
no stress control
+0.1
N.D.
N.D.
-0.3
N.D.
pH
R2A_PIPES pH 4.5
+0.2
N.D.
N.D.
-0.4
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.2
N.D.
N.D.
-0.1
N.D.
pH
R2A_PIPES pH 4.5
+0.2
N.D.
N.D.
-0.1
N.D.
pH
R2A_PIPES pH 4.25
-0.0
N.D.
N.D.
+0.6
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
N.D.
N.D.
+0.5
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.0
N.D.
N.D.
+0.6
N.D.
pH
R2A_PIPES pH 4.25
-0.0
N.D.
N.D.
+0.8
N.D.
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