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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS04050 and LRK55_RS04055 overlap by 4 nucleotides
LRK55_RS04055 and LRK55_RS04060 are separated by 233 nucleotides
LRK55_RS04060 and LRK55_RS04065 are separated by 51 nucleotides
LRK55_RS04065 and LRK55_RS04070 are separated by 110 nucleotides
LRK55_RS04050: LRK55_RS04050 - secondary thiamine-phosphate synthase enzyme YjbQ, at 861,901 to 862,341
_RS04050
LRK55_RS04055: LRK55_RS04055 - pyridoxamine 5'-phosphate oxidase, at 862,338 to 862,925
_RS04055
LRK55_RS04060: LRK55_RS04060 - kinase, at 863,159 to 863,989
_RS04060
LRK55_RS04065: LRK55_RS04065 - dodecin family protein, at 864,041 to 864,244
_RS04065
LRK55_RS04070: LRK55_RS04070 - YbjQ family protein, at 864,355 to 864,699
_RS04070
Group
Condition
LRK55
_RS04050
LRK55
_RS04055
LRK55
_RS04060
LRK55
_RS04065
LRK55
_RS04070
pH
R2A_PIPES pH 4.25
+0.4
N.D.
-3.8
N.D.
-0.3
pH
R2A_PIPES pH 4.25
+0.1
N.D.
-3.2
N.D.
-0.3
no stress control
no stress control
-0.0
N.D.
+0.2
N.D.
-1.6
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
N.D.
-0.6
N.D.
-0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.5
N.D.
-0.3
N.D.
-0.0
stress
R2A with Zinc chloride 2560 uM
+0.0
N.D.
-0.8
N.D.
-0.1
pH
R2A_PIPES pH 4.5
-0.3
N.D.
-0.1
N.D.
-0.2
no stress control
no stress control
-0.1
N.D.
+0.1
N.D.
-0.4
pH
R2A_PIPES pH 4.5
-0.2
N.D.
-0.2
N.D.
-0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
N.D.
-0.5
N.D.
+0.0
no stress control
no stress control
-0.2
N.D.
+0.1
N.D.
-0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
N.D.
-0.4
N.D.
+0.2
no stress control
no stress control
+0.0
N.D.
+0.3
N.D.
-0.4
stress
R2A with Zinc chloride 2560 uM
+0.1
N.D.
-0.4
N.D.
+0.2
stress
R2A with Nickel (II) chloride 1696 uM
-0.3
N.D.
+0.1
N.D.
+0.2
stress
R2A with Nickel (II) chloride 1696 uM
-0.3
N.D.
+0.2
N.D.
+0.1
no stress control
no stress control
-0.2
N.D.
+0.2
N.D.
+0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
N.D.
+0.2
N.D.
-0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
N.D.
+0.2
N.D.
+0.1
no stress control
no stress control
+0.3
N.D.
-0.0
N.D.
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.2
N.D.
+0.4
N.D.
+0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
N.D.
+0.3
N.D.
+0.4
no stress control
no stress control
+0.2
N.D.
+0.3
N.D.
+0.3
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