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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS03980 and LRK55_RS03985 overlap by 4 nucleotides
LRK55_RS03985 and LRK55_RS03990 are separated by 35 nucleotides
LRK55_RS03990 and LRK55_RS03995 are separated by 101 nucleotides
LRK55_RS03995 and LRK55_RS04000 are separated by 146 nucleotides
LRK55_RS03980: LRK55_RS03980 - YqgE/AlgH family protein, at 845,736 to 846,305
_RS03980
LRK55_RS03985: LRK55_RS03985 - Holliday junction resolvase RuvX, at 846,302 to 846,751
_RS03985
LRK55_RS03990: LRK55_RS03990 - aspartate carbamoyltransferase catalytic subunit, at 846,787 to 847,713
_RS03990
LRK55_RS03995: LRK55_RS03995 - hypothetical protein, at 847,815 to 849,599
_RS03995
LRK55_RS04000: LRK55_RS04000 - HAMP domain-containing sensor histidine kinase, at 849,746 to 851,014
_RS04000
Group
Condition
LRK55
_RS03980
LRK55
_RS03985
LRK55
_RS03990
LRK55
_RS03995
LRK55
_RS04000
stress
R2A with Metal_ion_mix_sitestressplate 2 x
N.D.
N.D.
N.D.
+0.0
-3.9
stress
R2A with Zinc chloride 2560 uM
N.D.
N.D.
N.D.
+0.6
-3.8
stress
R2A with Metal_ion_mix_sitestressplate 2 x
N.D.
N.D.
N.D.
+0.5
-3.5
stress
R2A with Zinc chloride 2560 uM
N.D.
N.D.
N.D.
+0.5
-2.9
stress
R2A with Nickel (II) chloride 1696 uM
N.D.
N.D.
N.D.
+0.2
-1.9
stress
R2A with Nickel (II) chloride 1696 uM
N.D.
N.D.
N.D.
+0.6
-2.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
N.D.
N.D.
N.D.
+0.8
-1.5
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
N.D.
N.D.
N.D.
+0.6
-1.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
N.D.
N.D.
N.D.
-0.1
-0.5
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
N.D.
N.D.
N.D.
-0.1
-0.4
pH
R2A_PIPES pH 4.25
N.D.
N.D.
N.D.
-0.4
+0.1
pH
R2A_PIPES pH 4.25
N.D.
N.D.
N.D.
-0.3
+0.2
no stress control
no stress control
N.D.
N.D.
N.D.
-0.1
+0.0
no stress control
no stress control
N.D.
N.D.
N.D.
-0.0
-0.1
no stress control
no stress control
N.D.
N.D.
N.D.
+0.1
-0.0
no stress control
no stress control
N.D.
N.D.
N.D.
+0.1
-0.0
no stress control
no stress control
N.D.
N.D.
N.D.
+0.1
+0.0
no stress control
no stress control
N.D.
N.D.
N.D.
+0.2
+0.1
pH
R2A_PIPES pH 4.5
N.D.
N.D.
N.D.
+0.3
+0.0
no stress control
no stress control
N.D.
N.D.
N.D.
+0.3
+0.1
pH
R2A_PIPES pH 4.5
N.D.
N.D.
N.D.
+0.3
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
N.D.
N.D.
N.D.
+0.4
+0.6
stress
R2A_PIPES with Cadmium chloride 64 uM
N.D.
N.D.
N.D.
+0.6
+0.5
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