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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS03960 and LRK55_RS03965 are separated by 22 nucleotides
LRK55_RS03965 and LRK55_RS03970 are separated by 362 nucleotides
LRK55_RS03970 and LRK55_RS03975 overlap by 4 nucleotides
LRK55_RS03975 and LRK55_RS03980 are separated by 52 nucleotides
LRK55_RS03960: LRK55_RS03960 - response regulator, at 842,673 to 843,044
_RS03960
LRK55_RS03965: LRK55_RS03965 - response regulator, at 843,067 to 843,477
_RS03965
LRK55_RS03970: LRK55_RS03970 - glutathione synthase, at 843,840 to 844,817
_RS03970
LRK55_RS03975: LRK55_RS03975 - energy transducer TonB, at 844,814 to 845,683
_RS03975
LRK55_RS03980: LRK55_RS03980 - YqgE/AlgH family protein, at 845,736 to 846,305
_RS03980
Group
Condition
LRK55
_RS03960
LRK55
_RS03965
LRK55
_RS03970
LRK55
_RS03975
LRK55
_RS03980
stress
R2A with Zinc chloride 2560 uM
-2.4
-0.2
N.D.
-0.1
N.D.
pH
R2A_PIPES pH 4.25
-2.9
+0.6
N.D.
-0.4
N.D.
stress
R2A with Zinc chloride 2560 uM
-2.7
-0.1
N.D.
+0.3
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-1.6
-0.2
N.D.
+0.3
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-1.4
+0.3
N.D.
-0.1
N.D.
pH
R2A_PIPES pH 4.5
-1.3
-0.4
N.D.
+0.5
N.D.
pH
R2A_PIPES pH 4.5
-1.2
-0.2
N.D.
+0.3
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.9
+0.1
N.D.
-0.2
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-1.2
+0.1
N.D.
+0.2
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
-1.6
+0.9
N.D.
-0.2
N.D.
no stress control
no stress control
-1.2
+0.7
N.D.
-0.3
N.D.
no stress control
no stress control
-1.2
+0.1
N.D.
+0.3
N.D.
no stress control
no stress control
-1.3
+0.7
N.D.
-0.1
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.7
+0.1
N.D.
+0.1
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-1.6
+0.8
N.D.
+0.4
N.D.
pH
R2A_PIPES pH 4.25
-0.6
+0.4
N.D.
-0.1
N.D.
no stress control
no stress control
-0.7
+0.6
N.D.
-0.2
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-1.0
+0.5
N.D.
+0.4
N.D.
no stress control
no stress control
-0.5
+0.6
N.D.
-0.2
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
-1.2
+0.9
N.D.
+0.4
N.D.
no stress control
no stress control
-0.2
+0.5
N.D.
-0.0
N.D.
no stress control
no stress control
-0.3
+0.5
N.D.
+0.2
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.7
N.D.
+0.2
N.D.
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