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Cofit
Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS03160 and LRK55_RS03165 overlap by 23 nucleotides
LRK55_RS03165 and LRK55_RS03170 are separated by 105 nucleotides
LRK55_RS03170 and LRK55_RS03175 overlap by 4 nucleotides
LRK55_RS03175 and LRK55_RS03180 are separated by 98 nucleotides
LRK55_RS03160: LRK55_RS03160 - ATP-binding protein, at 685,578 to 686,297
_RS03160
LRK55_RS03165: LRK55_RS03165 - mismatch-specific DNA-glycosylase, at 686,275 to 686,802
_RS03165
LRK55_RS03170: LRK55_RS03170 - cytochrome c, at 686,908 to 688,197
_RS03170
LRK55_RS03175: LRK55_RS03175 - c-type cytochrome, at 688,194 to 688,967
_RS03175
LRK55_RS03180: LRK55_RS03180 - amidase, at 689,066 to 690,679
_RS03180
Group
Condition
LRK55
_RS03160
LRK55
_RS03165
LRK55
_RS03170
LRK55
_RS03175
LRK55
_RS03180
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.2
-0.1
+0.1
-0.1
-0.1
stress
R2A with Nickel (II) chloride 1696 uM
+0.0
-0.1
+0.0
+0.1
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.4
+0.3
-0.0
+0.1
+0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
+0.0
-0.2
+0.1
+0.2
no stress control
no stress control
+0.3
-0.1
+0.0
+0.1
+0.0
no stress control
no stress control
+0.2
-0.1
+0.1
+0.0
+0.1
no stress control
no stress control
+0.4
+0.0
-0.0
-0.1
+0.1
no stress control
no stress control
+0.2
-0.0
+0.0
+0.1
+0.2
no stress control
no stress control
+0.4
-0.1
-0.0
-0.0
+0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.2
+0.0
+0.1
+0.1
+0.0
pH
R2A_PIPES pH 4.5
+0.1
+0.2
+0.1
+0.1
+0.2
stress
R2A with Zinc chloride 2560 uM
+0.2
+0.2
+0.1
+0.1
+0.1
stress
R2A with Zinc chloride 2560 uM
+0.3
+0.2
+0.0
-0.0
+0.1
no stress control
no stress control
+0.2
+0.2
+0.2
+0.0
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.3
-0.1
+0.1
+0.2
+0.2
stress
R2A with Nickel (II) chloride 1696 uM
+0.4
+0.1
+0.2
+0.0
+0.1
no stress control
no stress control
+0.6
+0.2
+0.2
+0.2
-0.3
pH
R2A_PIPES pH 4.5
+0.4
+0.1
+0.2
+0.2
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.4
+0.2
+0.1
+0.2
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.6
+0.2
+0.1
-0.1
+0.5
pH
R2A_PIPES pH 4.25
+0.5
+0.2
+0.4
+0.2
+0.4
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.7
+0.3
+0.3
+0.1
+0.4
pH
R2A_PIPES pH 4.25
+1.2
+0.3
+0.2
+0.0
+0.3
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