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Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS03155 and LRK55_RS03160 are separated by 153 nucleotides
LRK55_RS03160 and LRK55_RS03165 overlap by 23 nucleotides
LRK55_RS03165 and LRK55_RS03170 are separated by 105 nucleotides
LRK55_RS03170 and LRK55_RS03175 overlap by 4 nucleotides
LRK55_RS03155: LRK55_RS03155 - ribonuclease G, at 683,952 to 685,424
_RS03155
LRK55_RS03160: LRK55_RS03160 - ATP-binding protein, at 685,578 to 686,297
_RS03160
LRK55_RS03165: LRK55_RS03165 - mismatch-specific DNA-glycosylase, at 686,275 to 686,802
_RS03165
LRK55_RS03170: LRK55_RS03170 - cytochrome c, at 686,908 to 688,197
_RS03170
LRK55_RS03175: LRK55_RS03175 - c-type cytochrome, at 688,194 to 688,967
_RS03175
Group
Condition
LRK55
_RS03155
LRK55
_RS03160
LRK55
_RS03165
LRK55
_RS03170
LRK55
_RS03175
stress
R2A_PIPES with Cadmium chloride 64 uM
-3.1
-0.4
+0.3
-0.0
+0.1
stress
R2A with Zinc chloride 2560 uM
-3.3
+0.3
+0.2
+0.0
-0.0
stress
R2A with Zinc chloride 2560 uM
-3.1
+0.2
+0.2
+0.1
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-3.0
+0.6
+0.2
+0.1
-0.1
stress
R2A with Nickel (II) chloride 1696 uM
-2.0
+0.0
-0.1
+0.0
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-3.2
+0.7
+0.3
+0.3
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-2.6
+0.4
+0.2
+0.1
+0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-1.7
+0.2
-0.1
+0.1
-0.1
pH
R2A_PIPES pH 4.5
-2.2
+0.1
+0.2
+0.1
+0.1
no stress control
no stress control
-2.0
+0.4
+0.0
-0.0
-0.1
no stress control
no stress control
-2.0
+0.4
-0.1
-0.0
-0.0
pH
R2A_PIPES pH 4.5
-2.4
+0.4
+0.1
+0.2
+0.2
stress
R2A with Nickel (II) chloride 1696 uM
-2.4
+0.4
+0.1
+0.2
+0.0
no stress control
no stress control
-1.7
+0.2
-0.0
+0.0
+0.1
no stress control
no stress control
-1.7
+0.2
-0.1
+0.1
+0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-1.3
+0.1
+0.0
-0.2
+0.1
no stress control
no stress control
-1.5
+0.3
-0.1
+0.0
+0.1
no stress control
no stress control
-1.8
+0.2
+0.2
+0.2
+0.0
pH
R2A_PIPES pH 4.25
-2.2
+0.5
+0.2
+0.4
+0.2
pH
R2A_PIPES pH 4.25
-2.5
+1.2
+0.3
+0.2
+0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-1.3
+0.3
-0.1
+0.1
+0.2
no stress control
no stress control
-1.9
+0.6
+0.2
+0.2
+0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-1.2
+0.2
+0.0
+0.1
+0.1
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