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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS03125 and LRK55_RS03130 are separated by 107 nucleotides
LRK55_RS03130 and LRK55_RS03135 are separated by 29 nucleotides
LRK55_RS03135 and LRK55_RS03140 are separated by 312 nucleotides
LRK55_RS03140 and LRK55_RS03145 are separated by 335 nucleotides
LRK55_RS03125: LRK55_RS03125 - metalloprotease PmbA, at 674,072 to 675,439
_RS03125
LRK55_RS03130: LRK55_RS03130 - DUF1653 domain-containing protein, at 675,547 to 675,816
_RS03130
LRK55_RS03135: LRK55_RS03135 - ribosome biogenesis factor YjgA, at 675,846 to 676,397
_RS03135
LRK55_RS03140: LRK55_RS03140 - cytochrome C, at 676,710 to 678,095
_RS03140
LRK55_RS03145: LRK55_RS03145 - metalloprotease TldD, at 678,431 to 679,870
_RS03145
Group
Condition
LRK55
_RS03125
LRK55
_RS03130
LRK55
_RS03135
LRK55
_RS03140
LRK55
_RS03145
stress
R2A_PIPES with Cadmium chloride 64 uM
-1.2
-0.3
N.D.
+0.2
-2.2
pH
R2A_PIPES pH 4.25
-2.0
-0.0
N.D.
+0.3
-1.7
stress
R2A with Zinc chloride 2560 uM
-1.6
-0.0
N.D.
-0.0
-1.5
stress
R2A_PIPES with Cadmium chloride 64 uM
-1.4
-0.2
N.D.
+0.2
-1.6
pH
R2A_PIPES pH 4.25
-2.4
+0.9
N.D.
+0.4
-2.0
stress
R2A with Zinc chloride 2560 uM
-1.7
-0.0
N.D.
+0.1
-1.4
stress
R2A with Nickel (II) chloride 1696 uM
-1.9
+0.5
N.D.
+0.2
-1.4
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-1.4
-0.1
N.D.
+0.1
-1.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-1.2
-0.1
N.D.
+0.2
-1.4
pH
R2A_PIPES pH 4.5
-1.6
+0.3
N.D.
+0.1
-1.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-1.1
-0.0
N.D.
+0.2
-1.4
no stress control
no stress control
-1.0
-0.3
N.D.
-0.0
-0.9
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-1.0
-0.0
N.D.
+0.1
-1.2
stress
R2A with Nickel (II) chloride 1696 uM
-1.1
+0.1
N.D.
+0.1
-1.2
no stress control
no stress control
-0.8
-0.3
N.D.
+0.0
-1.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-1.4
+0.3
N.D.
+0.2
-1.1
no stress control
no stress control
-0.8
-0.1
N.D.
+0.2
-1.1
no stress control
no stress control
-0.7
-0.3
N.D.
+0.2
-0.9
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-1.0
+0.3
N.D.
+0.1
-1.0
pH
R2A_PIPES pH 4.5
-1.0
+0.3
N.D.
+0.2
-1.0
no stress control
no stress control
-0.9
+0.2
N.D.
+0.1
-0.8
no stress control
no stress control
-0.7
-0.2
N.D.
+0.1
-0.6
no stress control
no stress control
-0.6
+0.0
N.D.
+0.1
-0.8
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