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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS02785 and LRK55_RS02790 are separated by 47 nucleotides
LRK55_RS02790 and LRK55_RS02795 are separated by 140 nucleotides
LRK55_RS02795 and LRK55_RS02800 overlap by 27 nucleotides
LRK55_RS02800 and LRK55_RS02805 are separated by 50 nucleotides
LRK55_RS02785: LRK55_RS02785 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 602,764 to 604,167
_RS02785
LRK55_RS02790: LRK55_RS02790 - MtnX-like HAD-IB family phosphatase, at 604,215 to 604,916
_RS02790
LRK55_RS02795: LRK55_RS02795 - MipA/OmpV family protein, at 605,057 to 605,839
_RS02795
LRK55_RS02800: LRK55_RS02800 - type II CAAX endopeptidase family protein, at 605,813 to 606,586
_RS02800
LRK55_RS02805: LRK55_RS02805 - non-heme iron oxygenase ferredoxin subunit, at 606,637 to 606,951
_RS02805
Group
Condition
LRK55
_RS02785
LRK55
_RS02790
LRK55
_RS02795
LRK55
_RS02800
LRK55
_RS02805
pH
R2A_PIPES pH 4.5
-5.0
-4.7
-0.1
-0.1
-0.4
stress
R2A with Zinc chloride 2560 uM
-5.1
-5.2
-0.1
+0.2
+0.4
stress
R2A with Zinc chloride 2560 uM
-4.4
-4.7
+0.0
+0.2
+0.2
pH
R2A_PIPES pH 4.25
-4.2
-4.3
+0.1
+0.2
-0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-3.8
-4.2
+0.1
+0.4
-0.8
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-4.4
-3.6
+0.1
-0.0
-0.0
pH
R2A_PIPES pH 4.25
-4.6
-3.6
+0.0
+0.0
+0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-3.8
-3.9
+0.0
+0.1
+0.0
pH
R2A_PIPES pH 4.5
-3.8
-3.8
+0.3
+0.2
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
-2.8
-3.1
+0.4
+0.2
-0.5
stress
R2A with Nickel (II) chloride 1696 uM
-1.1
-1.7
-0.1
+0.1
-0.3
no stress control
no stress control
-0.6
-1.6
-0.1
+0.0
-0.1
no stress control
no stress control
-0.6
-1.4
+0.0
-0.1
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.9
-1.0
+0.1
-0.1
+0.0
no stress control
no stress control
-0.4
-1.5
-0.1
+0.1
+0.2
no stress control
no stress control
-0.3
-1.4
-0.1
+0.1
+0.0
no stress control
no stress control
-0.4
-1.0
+0.1
+0.1
-0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.8
-0.4
-0.0
-0.1
-0.0
stress
R2A with Nickel (II) chloride 1696 uM
-1.0
-0.3
+0.1
-0.0
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.8
-0.0
+0.1
+0.1
-0.0
no stress control
no stress control
-0.6
+0.1
+0.0
-0.0
+0.0
no stress control
no stress control
-0.1
-0.5
-0.2
+0.3
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.4
+0.2
+0.1
+0.3
-0.1
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