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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS02635 and LRK55_RS02640 are separated by 47 nucleotides
LRK55_RS02640 and LRK55_RS02645 are separated by 25 nucleotides
LRK55_RS02645 and LRK55_RS02650 are separated by 139 nucleotides
LRK55_RS02650 and LRK55_RS02655 are separated by 182 nucleotides
LRK55_RS02635: LRK55_RS02635 - RNA polymerase-associated protein RapA, at 567,437 to 570,277
_RS02635
LRK55_RS02640: LRK55_RS02640 - amino acid permease, at 570,325 to 571,680
_RS02640
LRK55_RS02645: LRK55_RS02645 - rhomboid family intramembrane serine protease, at 571,706 to 572,323
_RS02645
LRK55_RS02650: LRK55_RS02650 - C40 family peptidase, at 572,463 to 573,152
_RS02650
LRK55_RS02655: LRK55_RS02655 - YggS family pyridoxal phosphate-dependent enzyme, at 573,335 to 574,069
_RS02655
Group
Condition
LRK55
_RS02635
LRK55
_RS02640
LRK55
_RS02645
LRK55
_RS02650
LRK55
_RS02655
no stress control
no stress control
-2.0
+0.1
-3.6
+0.6
-0.0
no stress control
no stress control
-2.3
+0.1
-3.3
+0.4
+0.2
no stress control
no stress control
-1.8
+0.1
-3.6
+0.7
-0.1
no stress control
no stress control
-1.6
+0.0
-3.3
+0.4
-0.1
no stress control
no stress control
-2.3
+0.1
-3.3
+0.6
+0.3
stress
R2A with Nickel (II) chloride 1696 uM
-1.5
+0.4
-3.7
+0.6
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-1.8
+0.3
-2.8
+0.5
-0.2
no stress control
no stress control
-0.7
+0.2
-3.5
+0.6
-0.6
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-1.9
+0.3
-3.0
+0.4
+0.3
stress
R2A with Nickel (II) chloride 1696 uM
-1.4
+0.6
-3.7
+0.8
-0.0
pH
R2A_PIPES pH 4.5
-1.5
+0.4
-3.4
+1.1
-0.1
pH
R2A_PIPES pH 4.5
-1.6
+0.4
-3.2
+1.2
-0.2
no stress control
no stress control
-0.7
+0.1
-3.2
+0.6
-0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.6
+0.2
-3.6
+0.9
-0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.8
+0.4
-3.7
+0.9
+0.2
pH
R2A_PIPES pH 4.25
-1.6
+0.9
-3.1
+0.9
+0.4
stress
R2A with Zinc chloride 2560 uM
+1.1
+0.5
-3.7
+0.7
-0.8
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.5
+0.3
-3.3
+1.3
-0.1
stress
R2A with Zinc chloride 2560 uM
+1.3
+0.5
-3.4
+0.4
-0.9
pH
R2A_PIPES pH 4.25
-1.4
+0.9
-2.7
+1.1
+0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.5
+0.4
-3.0
+1.2
-0.8
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
+0.5
-3.0
+1.2
+0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
+0.2
-2.8
+1.7
-0.1
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