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Cofit
Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS02390 and LRK55_RS02395 are separated by 168 nucleotides
LRK55_RS02395 and LRK55_RS02400 are separated by 69 nucleotides
LRK55_RS02400 and LRK55_RS02405 are separated by 155 nucleotides
LRK55_RS02405 and LRK55_RS02410 are separated by 69 nucleotides
LRK55_RS02390: LRK55_RS02390 - class I SAM-dependent methyltransferase, at 515,612 to 516,268
_RS02390
LRK55_RS02395: LRK55_RS02395 - DEAD/DEAH box helicase, at 516,437 to 517,765
_RS02395
LRK55_RS02400: LRK55_RS02400 - S-formylglutathione hydrolase, at 517,835 to 518,683
_RS02400
LRK55_RS02405: LRK55_RS02405 - DEAD/DEAH box helicase, at 518,839 to 520,698
_RS02405
LRK55_RS02410: LRK55_RS02410 - sulfotransferase, at 520,768 to 522,384
_RS02410
Group
Condition
LRK55
_RS02390
LRK55
_RS02395
LRK55
_RS02400
LRK55
_RS02405
LRK55
_RS02410
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.0
-0.5
+0.0
-0.0
+0.1
no stress control
no stress control
-0.0
-0.4
+0.0
+0.2
+0.1
no stress control
no stress control
-0.1
-0.1
-0.2
+0.2
+0.2
no stress control
no stress control
-0.0
+0.0
-0.1
+0.3
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
+0.3
-0.3
+0.1
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.0
-0.1
+0.3
+0.2
+0.0
stress
R2A with Zinc chloride 2560 uM
-0.0
-0.5
-0.0
+0.7
+0.2
no stress control
no stress control
-0.1
+0.2
-0.0
+0.3
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.0
-0.1
+0.0
+0.2
+0.3
no stress control
no stress control
+0.1
+0.4
-0.3
+0.2
+0.1
pH
R2A_PIPES pH 4.5
-0.0
+0.1
-0.0
+0.3
+0.2
stress
R2A with Zinc chloride 2560 uM
+0.1
-0.5
-0.0
+0.7
+0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
+0.1
-0.1
+0.4
+0.3
no stress control
no stress control
-0.2
+0.2
+0.1
+0.2
+0.2
no stress control
no stress control
-0.0
+0.6
-0.2
+0.2
+0.1
pH
R2A_PIPES pH 4.5
-0.0
+0.1
-0.0
+0.4
+0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.1
+0.1
-0.0
+0.6
+0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
+0.3
+0.1
+0.4
+0.1
pH
R2A_PIPES pH 4.25
-0.4
+0.5
+0.2
+0.5
+0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
+0.1
+0.1
+0.4
+0.2
pH
R2A_PIPES pH 4.25
-0.2
+0.1
+0.5
+0.4
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.0
+0.7
-0.0
+0.4
+0.0
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
+0.6
+0.0
+0.5
+0.1
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