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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS01865 and LRK55_RS01870 are separated by 521 nucleotides
LRK55_RS01870 and LRK55_RS01875 are separated by 12 nucleotides
LRK55_RS01875 and LRK55_RS01880 are separated by 174 nucleotides
LRK55_RS01880 and LRK55_RS01885 are separated by 132 nucleotides
LRK55_RS01865: LRK55_RS01865 - NAD-glutamate dehydrogenase, at 394,250 to 399,178
_RS01865
LRK55_RS01870: LRK55_RS01870 - efflux RND transporter periplasmic adaptor subunit, at 399,700 to 400,887
_RS01870
LRK55_RS01875: LRK55_RS01875 - multidrug efflux RND transporter permease subunit, at 400,900 to 404,067
_RS01875
LRK55_RS01880: LRK55_RS01880 - acyl-CoA dehydrogenase family protein, at 404,242 to 405,402
_RS01880
LRK55_RS01885: LRK55_RS01885 - metalloregulator ArsR/SmtB family transcription factor, at 405,535 to 406,464
_RS01885
Group
Condition
LRK55
_RS01865
LRK55
_RS01870
LRK55
_RS01875
LRK55
_RS01880
LRK55
_RS01885
pH
R2A_PIPES pH 4.25
-3.0
-1.1
-1.2
-3.6
-1.1
pH
R2A_PIPES pH 4.25
-2.9
-0.9
-1.5
-3.5
-0.8
stress
R2A_PIPES with Cadmium chloride 64 uM
-3.2
+0.2
-0.0
-2.2
-2.7
stress
R2A_PIPES with Cadmium chloride 64 uM
-2.8
+0.4
+0.1
-2.8
-2.8
stress
R2A with Zinc chloride 2560 uM
-3.9
+0.2
+0.0
-2.2
-1.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-3.4
-0.0
-0.4
-1.2
-1.4
stress
R2A with Zinc chloride 2560 uM
-3.7
+0.1
-0.1
-2.0
-0.8
stress
R2A with Nickel (II) chloride 1696 uM
-3.4
-0.1
-0.2
-1.7
-0.7
pH
R2A_PIPES pH 4.5
-3.6
-0.1
-0.3
-1.5
-0.7
pH
R2A_PIPES pH 4.5
-3.5
-0.2
-0.3
-1.3
-0.4
stress
R2A with Nickel (II) chloride 1696 uM
-3.2
+0.0
-0.2
-1.4
-0.8
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-3.3
-0.0
-0.2
-1.2
-0.9
no stress control
no stress control
-3.1
+0.1
-0.1
-1.2
-1.1
no stress control
no stress control
-2.9
+0.1
-0.1
-1.3
-0.7
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-3.4
+0.1
+0.1
-0.8
-0.7
no stress control
no stress control
-2.8
+0.1
-0.2
-1.2
-0.6
no stress control
no stress control
-2.9
+0.0
+0.0
-1.2
-0.6
no stress control
no stress control
-2.9
+0.1
-0.1
-1.0
-0.7
no stress control
no stress control
-3.1
+0.1
-0.1
-1.1
-0.3
no stress control
no stress control
-3.1
+0.1
-0.0
-0.9
-0.6
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-2.7
-0.1
-0.1
-1.2
-0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-3.1
+0.2
+0.0
-0.6
-0.8
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-2.7
-0.0
-0.1
-0.9
-0.3
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