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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS01755 and LRK55_RS01760 are separated by 9 nucleotides
LRK55_RS01760 and LRK55_RS01765 overlap by 4 nucleotides
LRK55_RS01765 and LRK55_RS01770 are separated by 102 nucleotides
LRK55_RS01770 and LRK55_RS01775 are separated by 147 nucleotides
LRK55_RS01755: LRK55_RS01755 - c-type cytochrome, at 370,546 to 371,619
_RS01755
LRK55_RS01760: LRK55_RS01760 - copper resistance protein B, at 371,629 to 372,762
_RS01760
LRK55_RS01765: LRK55_RS01765 - copper resistance system multicopper oxidase, at 372,759 to 374,510
_RS01765
LRK55_RS01770: LRK55_RS01770 - hypothetical protein, at 374,613 to 374,960
_RS01770
LRK55_RS01775: LRK55_RS01775 - hypothetical protein, at 375,108 to 375,443
_RS01775
Group
Condition
LRK55
_RS01755
LRK55
_RS01760
LRK55
_RS01765
LRK55
_RS01770
LRK55
_RS01775
no stress control
no stress control
-0.2
-0.3
-0.1
-0.3
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.3
-0.1
-0.1
-0.4
N.D.
no stress control
no stress control
+0.1
-0.5
-0.1
-0.2
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
-1.0
-0.3
+0.2
+0.4
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.0
-0.1
+0.1
-0.5
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.3
-0.2
+0.1
-0.5
N.D.
no stress control
no stress control
-0.0
-0.2
-0.1
+0.0
N.D.
no stress control
no stress control
+0.1
-0.4
-0.1
+0.2
N.D.
no stress control
no stress control
-0.2
-0.2
+0.0
+0.3
N.D.
pH
R2A_PIPES pH 4.25
-0.2
+0.3
+0.1
-0.1
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
-0.5
-0.1
+0.7
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
-0.0
+0.1
-0.1
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
+0.4
-0.4
+0.0
+0.2
N.D.
pH
R2A_PIPES pH 4.5
+0.2
+0.0
+0.2
-0.2
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
+0.2
-0.0
+0.0
+0.1
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.3
+0.2
+0.1
+0.0
N.D.
pH
R2A_PIPES pH 4.25
-0.7
-0.0
+0.3
+1.0
N.D.
no stress control
no stress control
+0.5
+0.1
-0.0
+0.1
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
+0.3
-0.0
+0.4
N.D.
stress
R2A with Zinc chloride 2560 uM
+0.2
+0.0
+0.1
+0.5
N.D.
stress
R2A with Zinc chloride 2560 uM
+0.0
+0.2
+0.1
+0.7
N.D.
pH
R2A_PIPES pH 4.5
+0.4
-0.0
+0.1
+0.8
N.D.
no stress control
no stress control
+0.5
+0.2
-0.0
+1.3
N.D.
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