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Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS01630 and LRK55_RS01635 overlap by 8 nucleotides
LRK55_RS01635 and LRK55_RS01640 overlap by 4 nucleotides
LRK55_RS01640 and LRK55_RS01645 are separated by 52 nucleotides
LRK55_RS01645 and LRK55_RS01650 are separated by 43 nucleotides
LRK55_RS01630: LRK55_RS01630 - DUF2007 domain-containing protein, at 346,553 to 347,008
_RS01630
LRK55_RS01635: LRK55_RS01635 - RnfABCDGE type electron transport complex subunit B, at 347,001 to 347,615
_RS01635
LRK55_RS01640: LRK55_RS01640 - endonuclease III, at 347,612 to 348,247
_RS01640
LRK55_RS01645: LRK55_RS01645 - class I SAM-dependent methyltransferase, at 348,300 to 348,908
_RS01645
LRK55_RS01650: LRK55_RS01650 - sensor domain-containing protein, at 348,952 to 349,869
_RS01650
Group
Condition
LRK55
_RS01630
LRK55
_RS01635
LRK55
_RS01640
LRK55
_RS01645
LRK55
_RS01650
no stress control
no stress control
+0.0
-2.1
-0.3
+0.1
-0.2
no stress control
no stress control
-0.4
-1.2
-0.2
-0.1
+0.0
stress
R2A with Nickel (II) chloride 1696 uM
-0.2
-1.1
-0.0
+0.2
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
-1.4
+0.2
-0.0
+0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
-0.7
+0.0
+0.1
+0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.0
-0.6
-0.2
+0.0
-0.1
no stress control
no stress control
-0.2
-0.0
-0.2
-0.1
-0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.0
-0.6
-0.1
+0.2
+0.0
pH
R2A_PIPES pH 4.25
-0.6
-0.0
+0.2
+0.0
-0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.0
-0.0
-0.3
-0.1
-0.0
no stress control
no stress control
+0.0
-0.3
-0.2
+0.0
+0.0
pH
R2A_PIPES pH 4.5
+0.0
+0.0
-0.3
-0.0
-0.1
no stress control
no stress control
-0.1
+0.0
-0.2
+0.1
-0.2
no stress control
no stress control
-0.0
-0.0
-0.3
-0.0
-0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.4
+0.3
-0.4
+0.1
-0.0
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
-0.0
-0.2
-0.0
+0.0
pH
R2A_PIPES pH 4.5
+0.1
-0.2
-0.3
+0.1
+0.0
stress
R2A with Zinc chloride 2560 uM
-0.0
+0.0
-0.1
-0.0
-0.0
stress
R2A with Zinc chloride 2560 uM
+0.1
+0.2
-0.5
+0.1
-0.1
no stress control
no stress control
+0.2
+0.1
-0.1
-0.0
-0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
-0.0
-0.2
+0.2
-0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.3
+0.2
+0.1
+0.1
+0.0
pH
R2A_PIPES pH 4.25
+0.0
-0.0
-0.1
+0.3
+0.1
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