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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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5
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS01535 and LRK55_RS01540 are separated by 10 nucleotides
LRK55_RS01540 and LRK55_RS01545 overlap by 4 nucleotides
LRK55_RS01545 and LRK55_RS01550 are separated by 29 nucleotides
LRK55_RS01550 and LRK55_RS01555 are separated by 78 nucleotides
LRK55_RS01535: LRK55_RS01535 - DUF853 family protein, at 327,765 to 329,258
_RS01535
LRK55_RS01540: LRK55_RS01540 - hypothetical protein, at 329,269 to 330,519
_RS01540
LRK55_RS01545: LRK55_RS01545 - transcription elongation factor GreB, at 330,516 to 331,016
_RS01545
LRK55_RS01550: LRK55_RS01550 - phosphate/phosphite/phosphonate ABC transporter substrate-binding protein, at 331,046 to 332,095
_RS01550
LRK55_RS01555: LRK55_RS01555 - DUF3025 domain-containing protein, at 332,174 to 332,977
_RS01555
Group
Condition
LRK55
_RS01535
LRK55
_RS01540
LRK55
_RS01545
LRK55
_RS01550
LRK55
_RS01555
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
+0.0
-0.0
-0.2
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
-0.1
-0.2
-0.3
+0.2
stress
R2A with Zinc chloride 2560 uM
-0.0
+0.1
-0.0
+0.2
-0.4
no stress control
no stress control
-0.1
-0.1
+0.2
-0.1
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
+0.0
-0.1
-0.0
-0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.0
-0.1
+0.2
+0.2
-0.3
no stress control
no stress control
-0.1
-0.2
+0.2
+0.1
-0.1
no stress control
no stress control
-0.1
+0.2
-0.1
+0.0
-0.1
no stress control
no stress control
+0.0
-0.1
+0.1
-0.1
+0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
-0.1
-0.0
+0.1
+0.2
stress
R2A with Zinc chloride 2560 uM
-0.3
-0.2
-0.1
+0.2
+0.5
no stress control
no stress control
-0.2
+0.0
-0.1
+0.1
+0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.0
-0.0
+0.0
+0.3
-0.0
pH
R2A_PIPES pH 4.25
+0.1
+0.2
-0.1
-0.0
+0.2
stress
R2A with Nickel (II) chloride 1696 uM
+0.0
-0.0
+0.2
+0.1
+0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
+0.1
+0.2
-0.0
+0.2
no stress control
no stress control
-0.1
-0.1
+0.3
+0.0
+0.3
pH
R2A_PIPES pH 4.5
+0.1
+0.2
-0.0
+0.2
-0.0
pH
R2A_PIPES pH 4.25
+0.1
-0.1
-0.3
+0.4
+0.4
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
+0.1
-0.0
+0.1
+0.4
pH
R2A_PIPES pH 4.5
-0.0
+0.0
+0.2
+0.2
+0.2
no stress control
no stress control
+0.1
+0.1
+0.2
+0.1
+0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.0
+0.0
+0.4
+0.0
+0.3
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