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Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS01350 and LRK55_RS01355 are separated by 65 nucleotides
LRK55_RS01355 and LRK55_RS01360 are separated by 19 nucleotides
LRK55_RS01360 and LRK55_RS01365 are separated by 97 nucleotides
LRK55_RS01365 and LRK55_RS01370 overlap by 4 nucleotides
LRK55_RS01350: LRK55_RS01350 - LytTR family DNA-binding domain-containing protein, at 294,691 to 295,560
_RS01350
LRK55_RS01355: LRK55_RS01355 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 295,626 to 296,258
_RS01355
LRK55_RS01360: LRK55_RS01360 - imidazole glycerol phosphate synthase subunit HisF, at 296,278 to 297,048
_RS01360
LRK55_RS01365: LRK55_RS01365 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 297,146 to 297,874
_RS01365
LRK55_RS01370: LRK55_RS01370 - imidazole glycerol phosphate synthase subunit HisH, at 297,871 to 298,461
_RS01370
Group
Condition
LRK55
_RS01350
LRK55
_RS01355
LRK55
_RS01360
LRK55
_RS01365
LRK55
_RS01370
stress
R2A with Nickel (II) chloride 1696 uM
-0.5
-0.1
-1.7
-0.9
-1.3
stress
R2A with Nickel (II) chloride 1696 uM
-0.0
-0.1
-1.7
-0.7
-0.7
no stress control
no stress control
-0.8
+0.0
-0.4
-0.4
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.4
+0.2
-0.9
-0.3
-0.2
no stress control
no stress control
-0.3
-0.1
-0.1
-0.2
-0.7
pH
R2A_PIPES pH 4.5
-0.3
+0.1
-0.5
-0.4
-0.3
no stress control
no stress control
-0.1
+0.1
-0.3
-0.1
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.4
+0.2
+0.1
+0.1
-0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
+0.3
-0.1
-0.3
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.0
+0.1
-0.2
-0.3
+0.1
no stress control
no stress control
+0.1
-0.2
-0.3
+0.2
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.3
+0.1
-0.0
+0.1
+0.1
pH
R2A_PIPES pH 4.5
+0.2
+0.2
+0.0
-0.1
-0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
-0.0
-0.2
+0.2
+0.0
no stress control
no stress control
-0.2
+0.3
+0.0
+0.1
+0.1
no stress control
no stress control
-0.2
-0.1
+0.4
+0.1
+0.3
no stress control
no stress control
-0.1
+0.2
+0.1
+0.3
+0.0
stress
R2A with Zinc chloride 2560 uM
-0.6
+0.6
-0.3
+0.8
+0.7
pH
R2A_PIPES pH 4.25
-0.1
+0.3
+0.3
+0.4
+0.3
stress
R2A with Zinc chloride 2560 uM
-0.2
+0.8
-0.7
+0.8
+0.8
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.6
+0.8
+0.2
+0.9
+0.5
pH
R2A_PIPES pH 4.25
-0.3
+0.3
+0.7
+0.5
+0.9
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
+0.8
+0.9
+1.0
+0.9
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