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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS01325 and LRK55_RS01330 overlap by 4 nucleotides
LRK55_RS01330 and LRK55_RS01335 are separated by 50 nucleotides
LRK55_RS01335 and LRK55_RS01340 are separated by 19 nucleotides
LRK55_RS01340 and LRK55_RS01345 are separated by 95 nucleotides
LRK55_RS01325: LRK55_RS01325 - methylthioribulose 1-phosphate dehydratase, at 289,724 to 290,374
_RS01325
LRK55_RS01330: LRK55_RS01330 - acireductone dioxygenase, at 290,371 to 290,922
_RS01330
LRK55_RS01335: LRK55_RS01335 - acireductone synthase, at 290,973 to 291,659
_RS01335
LRK55_RS01340: LRK55_RS01340 - C13 family peptidase, at 291,679 to 292,689
_RS01340
LRK55_RS01345: LRK55_RS01345 - carboxylesterase family protein, at 292,785 to 294,533
_RS01345
Group
Condition
LRK55
_RS01325
LRK55
_RS01330
LRK55
_RS01335
LRK55
_RS01340
LRK55
_RS01345
pH
R2A_PIPES pH 4.5
-1.0
+0.1
N.D.
-0.7
-0.2
pH
R2A_PIPES pH 4.25
-1.2
+0.9
N.D.
-1.0
-0.4
pH
R2A_PIPES pH 4.25
-1.3
+0.6
N.D.
-0.7
-0.0
no stress control
no stress control
-0.2
-0.8
N.D.
-0.3
-0.1
pH
R2A_PIPES pH 4.5
-0.8
+0.6
N.D.
-0.7
-0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
-0.3
N.D.
-0.6
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.4
+0.0
N.D.
-0.5
-0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.6
+0.3
N.D.
-0.6
-0.2
no stress control
no stress control
-0.4
-0.2
N.D.
-0.3
-0.1
no stress control
no stress control
-0.2
-0.2
N.D.
-0.4
-0.2
no stress control
no stress control
-0.1
-0.2
N.D.
-0.5
-0.1
no stress control
no stress control
-0.1
-0.2
N.D.
-0.4
-0.2
no stress control
no stress control
-0.2
-0.0
N.D.
-0.3
-0.2
stress
R2A with Nickel (II) chloride 1696 uM
-0.6
+0.6
N.D.
-0.5
-0.2
no stress control
no stress control
-0.1
-0.2
N.D.
-0.2
-0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.5
+0.5
N.D.
-0.4
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.3
+0.2
N.D.
-0.4
-0.0
stress
R2A with Nickel (II) chloride 1696 uM
-0.5
+0.6
N.D.
-0.4
-0.2
stress
R2A with Zinc chloride 2560 uM
-0.0
+0.2
N.D.
-0.4
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.3
+0.3
N.D.
-0.2
-0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
+0.9
N.D.
-0.8
-0.2
stress
R2A with Zinc chloride 2560 uM
-0.1
+0.5
N.D.
-0.3
-0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.5
+0.6
N.D.
-0.1
-0.1
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