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Cofit
Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS01080 and LRK55_RS01085 are separated by 59 nucleotides
LRK55_RS01085 and LRK55_RS01090 are separated by 108 nucleotides
LRK55_RS01090 and LRK55_RS01095 are separated by 98 nucleotides
LRK55_RS01095 and LRK55_RS01100 are separated by 27 nucleotides
LRK55_RS01080: LRK55_RS01080 - BON domain-containing protein, at 233,484 to 234,134
_RS01080
LRK55_RS01085: LRK55_RS01085 - zinc-dependent alcohol dehydrogenase family protein, at 234,194 to 235,177
_RS01085
LRK55_RS01090: LRK55_RS01090 - alpha/beta fold hydrolase, at 235,286 to 236,650
_RS01090
LRK55_RS01095: LRK55_RS01095 - erythromycin esterase family protein, at 236,749 to 238,080
_RS01095
LRK55_RS01100: LRK55_RS01100 - ferritin-like domain-containing protein, at 238,108 to 238,926
_RS01100
Group
Condition
LRK55
_RS01080
LRK55
_RS01085
LRK55
_RS01090
LRK55
_RS01095
LRK55
_RS01100
no stress control
no stress control
-0.1
-0.2
+0.1
-0.1
-0.1
stress
R2A with Zinc chloride 2560 uM
-0.1
-0.1
+0.1
+0.0
-0.2
pH
R2A_PIPES pH 4.25
-0.2
-0.1
+0.1
+0.0
-0.2
pH
R2A_PIPES pH 4.25
-0.1
-0.5
+0.2
-0.1
+0.2
no stress control
no stress control
-0.1
-0.0
+0.0
+0.1
-0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
+0.2
-0.1
-0.1
-0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.2
+0.5
-0.1
+0.0
+0.0
pH
R2A_PIPES pH 4.5
-0.1
+0.1
+0.1
+0.0
+0.1
no stress control
no stress control
-0.2
+0.3
+0.1
+0.0
+0.1
pH
R2A_PIPES pH 4.5
-0.1
+0.4
+0.1
+0.1
-0.1
no stress control
no stress control
-0.0
+0.2
+0.3
+0.0
-0.2
no stress control
no stress control
+0.2
+0.1
+0.1
+0.0
-0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.3
+0.4
+0.1
+0.1
+0.1
no stress control
no stress control
+0.1
+0.1
-0.0
-0.0
+0.3
stress
R2A with Zinc chloride 2560 uM
-0.3
+0.6
+0.2
+0.1
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
+0.7
+0.0
+0.1
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.0
-0.2
+0.3
+0.2
+0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
+0.1
+0.2
+0.1
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
+0.4
-0.1
+0.2
+0.3
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.4
+0.2
+0.1
+0.0
no stress control
no stress control
+0.2
+0.4
+0.1
+0.1
+0.0
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.5
+0.2
+0.1
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.4
+0.4
+0.2
+0.1
+0.3
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