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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS01045 and LRK55_RS01050 overlap by 4 nucleotides
LRK55_RS01050 and LRK55_RS01055 are separated by 34 nucleotides
LRK55_RS01055 and LRK55_RS01060 are separated by 32 nucleotides
LRK55_RS01060 and LRK55_RS01065 are separated by 29 nucleotides
LRK55_RS01045: LRK55_RS01045 - MBL fold metallo-hydrolase, at 226,730 to 227,488
_RS01045
LRK55_RS01050: LRK55_RS01050 - 3-deoxy-D-manno-octulosonic acid kinase, at 227,485 to 228,216
_RS01050
LRK55_RS01055: LRK55_RS01055 - glycosyltransferase family 9 protein, at 228,251 to 229,294
_RS01055
LRK55_RS01060: LRK55_RS01060 - DUF6165 family protein, at 229,327 to 229,725
_RS01060
LRK55_RS01065: LRK55_RS01065 - aromatic amino acid lyase, at 229,755 to 231,656
_RS01065
Group
Condition
LRK55
_RS01045
LRK55
_RS01050
LRK55
_RS01055
LRK55
_RS01060
LRK55
_RS01065
stress
R2A_PIPES with Cadmium chloride 64 uM
-3.2
-2.3
-1.4
-3.2
-0.4
stress
R2A_PIPES with Cadmium chloride 64 uM
-2.8
-2.0
-1.4
-3.3
-0.3
pH
R2A_PIPES pH 4.25
-2.4
-1.6
-3.6
-1.5
+0.2
pH
R2A_PIPES pH 4.25
-2.0
-1.9
-2.2
-2.2
+0.4
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-3.6
-1.7
-0.5
-1.6
-0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-2.9
-1.1
-0.3
-1.0
-0.1
stress
R2A with Nickel (II) chloride 1696 uM
-2.8
-1.1
-0.6
-1.0
+0.1
stress
R2A with Zinc chloride 2560 uM
-2.6
-1.9
-0.3
-0.7
+0.1
pH
R2A_PIPES pH 4.5
-2.2
-2.2
-0.3
-0.7
+0.0
stress
R2A with Zinc chloride 2560 uM
-3.4
-0.7
-0.3
-0.9
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
-2.9
-1.9
-0.3
-0.1
+0.1
pH
R2A_PIPES pH 4.5
-2.5
-1.7
-0.2
-0.6
+0.0
no stress control
no stress control
-3.2
-1.1
-0.1
-0.3
-0.0
no stress control
no stress control
-3.5
-0.6
-0.2
-0.2
-0.1
no stress control
no stress control
-2.9
-1.1
-0.2
-0.4
+0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-2.6
-1.2
-0.0
-0.7
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-3.2
-0.8
+0.1
-0.5
-0.0
no stress control
no stress control
-3.2
-0.7
-0.4
-0.1
+0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-3.3
-0.9
-0.0
-0.0
-0.0
no stress control
no stress control
-2.7
-0.7
-0.1
-0.7
-0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-2.8
-0.7
-0.1
-0.7
+0.2
no stress control
no stress control
-2.6
-0.8
-0.1
-0.1
+0.0
no stress control
no stress control
-2.1
-0.5
-0.2
-0.5
+0.0
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