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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS00985 and LRK55_RS00990 overlap by 4 nucleotides
LRK55_RS00990 and LRK55_RS00995 are separated by 52 nucleotides
LRK55_RS00995 and LRK55_RS01000 overlap by 1 nucleotides
LRK55_RS01000 and LRK55_RS01005 overlap by 4 nucleotides
LRK55_RS00985: LRK55_RS00985 - hypothetical protein, at 217,569 to 218,024
_RS00985
LRK55_RS00990: LRK55_RS00990 - Maf family protein, at 218,021 to 218,617
_RS00990
LRK55_RS00995: LRK55_RS00995 - AAA family ATPase, at 218,670 to 219,611
_RS00995
LRK55_RS01000: LRK55_RS01000 - DUF58 domain-containing protein, at 219,611 to 220,564
_RS01000
LRK55_RS01005: LRK55_RS01005 - DUF3488 and transglutaminase-like domain-containing protein, at 220,561 to 222,543
_RS01005
Group
Condition
LRK55
_RS00985
LRK55
_RS00990
LRK55
_RS00995
LRK55
_RS01000
LRK55
_RS01005
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.7
-0.3
-0.2
+0.0
+0.0
no stress control
no stress control
-0.6
-0.2
+0.0
+0.0
-0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
-0.1
-0.1
-0.2
+0.0
no stress control
no stress control
-0.2
-0.2
+0.2
-0.0
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.6
-0.3
+0.3
+0.0
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
-1.2
-0.2
+0.5
+0.1
+0.5
no stress control
no stress control
-0.6
+0.0
+0.2
+0.0
+0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.6
+0.1
+0.0
-0.0
+0.4
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
+0.0
+0.1
-0.0
+0.0
no stress control
no stress control
+0.0
-0.2
-0.0
-0.1
+0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
+0.2
+0.1
-0.0
-0.1
no stress control
no stress control
+0.2
+0.2
-0.4
+0.1
+0.1
pH
R2A_PIPES pH 4.5
-0.3
+0.2
+0.1
+0.2
-0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.0
-0.4
+0.3
+0.2
+0.2
no stress control
no stress control
+0.3
-0.2
+0.1
+0.1
+0.2
stress
R2A with Nickel (II) chloride 1696 uM
+0.3
-0.0
-0.1
+0.3
+0.0
pH
R2A_PIPES pH 4.25
+0.5
-0.2
-0.1
+0.3
+0.4
stress
R2A with Nickel (II) chloride 1696 uM
+0.8
+0.1
-0.3
+0.1
+0.1
stress
R2A with Zinc chloride 2560 uM
+0.3
+0.1
+0.4
-0.0
+0.1
pH
R2A_PIPES pH 4.5
+0.4
+0.1
+0.2
+0.2
+0.2
stress
R2A with Zinc chloride 2560 uM
+0.4
+0.0
+0.3
+0.3
+0.2
pH
R2A_PIPES pH 4.25
+0.8
+0.5
+0.2
-0.1
+0.0
no stress control
no stress control
+0.9
+0.2
+0.4
+0.0
+0.1
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