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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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5
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS00750 and LRK55_RS00755 are separated by 70 nucleotides
LRK55_RS00755 and LRK55_RS00760 are separated by 96 nucleotides
LRK55_RS00760 and LRK55_RS00765 are separated by 140 nucleotides
LRK55_RS00765 and LRK55_RS00770 are separated by 145 nucleotides
LRK55_RS00750: LRK55_RS00750 - twitching motility response regulator PilH, at 168,225 to 168,590
_RS00750
LRK55_RS00755: LRK55_RS00755 - DnaJ C-terminal domain-containing protein, at 168,661 to 169,554
_RS00755
LRK55_RS00760: LRK55_RS00760 - Hsp20/alpha crystallin family protein, at 169,651 to 170,109
_RS00760
LRK55_RS00765: LRK55_RS00765 - peroxiredoxin, at 170,250 to 170,732
_RS00765
LRK55_RS00770: LRK55_RS00770 - hypothetical protein, at 170,878 to 171,309
_RS00770
Group
Condition
LRK55
_RS00750
LRK55
_RS00755
LRK55
_RS00760
LRK55
_RS00765
LRK55
_RS00770
no stress control
no stress control
+0.2
+0.5
+0.1
-0.0
-0.2
no stress control
no stress control
+0.1
+0.6
-0.2
-0.1
+0.1
pH
R2A_PIPES pH 4.5
+0.1
+0.6
+0.4
-0.0
-0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+1.4
-0.1
-0.0
-0.1
-0.4
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
+0.6
+0.3
+0.2
-0.1
no stress control
no stress control
+0.3
+0.4
+0.4
-0.0
-0.2
no stress control
no stress control
+0.1
+0.5
+0.5
-0.0
-0.3
no stress control
no stress control
+0.4
+0.5
+0.0
+0.2
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+1.0
+0.3
-0.3
-0.0
-0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.9
-0.0
+0.3
-0.1
-0.1
no stress control
no stress control
+0.2
+0.7
+0.4
+0.0
-0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.8
+0.3
+0.4
-0.3
-0.1
pH
R2A_PIPES pH 4.5
+0.3
+0.7
+0.1
+0.3
-0.3
no stress control
no stress control
+0.3
+0.6
+0.4
+0.0
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.7
+0.4
+0.4
+0.0
-0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+1.2
+0.0
+0.1
+0.2
-0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.0
+0.9
+0.4
+0.2
-0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
+1.0
+1.2
-0.3
+0.0
stress
R2A with Zinc chloride 2560 uM
+0.7
+1.1
+0.3
+0.1
-0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
+1.0
+1.1
-0.1
-0.2
pH
R2A_PIPES pH 4.25
+1.1
+1.0
-0.1
+0.2
-0.3
stress
R2A with Zinc chloride 2560 uM
+0.8
+1.0
+0.6
+0.2
-0.5
pH
R2A_PIPES pH 4.25
+1.4
+0.9
-0.1
+0.2
-0.2
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