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Cofit
Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS00410 and LRK55_RS00415 are separated by 114 nucleotides
LRK55_RS00415 and LRK55_RS00420 are separated by 130 nucleotides
LRK55_RS00420 and LRK55_RS00425 are separated by 136 nucleotides
LRK55_RS00425 and LRK55_RS00430 are separated by 87 nucleotides
LRK55_RS00410: LRK55_RS00410 - S46 family peptidase, at 79,718 to 81,880
_RS00410
LRK55_RS00415: LRK55_RS00415 - S46 family peptidase, at 81,995 to 84,175
_RS00415
LRK55_RS00420: LRK55_RS00420 - L-threonine 3-dehydrogenase, at 84,306 to 85,340
_RS00420
LRK55_RS00425: LRK55_RS00425 - DUF748 domain-containing protein, at 85,477 to 89,133
_RS00425
LRK55_RS00430: LRK55_RS00430 - glycine C-acetyltransferase, at 89,221 to 90,420
_RS00430
Group
Condition
LRK55
_RS00410
LRK55
_RS00415
LRK55
_RS00420
LRK55
_RS00425
LRK55
_RS00430
stress
R2A with Zinc chloride 2560 uM
-0.1
-0.0
-0.4
+0.0
-0.8
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.1
-0.0
-0.1
-0.0
-0.5
stress
R2A with Zinc chloride 2560 uM
-0.0
+0.1
-0.3
+0.1
-0.7
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
+0.1
-0.2
+0.2
-0.8
no stress control
no stress control
-0.1
+0.0
+0.1
+0.1
-0.7
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.0
+0.1
-0.2
+0.1
-0.6
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
+0.2
+0.0
+0.2
-0.8
no stress control
no stress control
-0.2
-0.0
+0.1
-0.1
-0.4
stress
R2A with Nickel (II) chloride 1696 uM
+0.0
+0.0
-0.1
+0.1
-0.5
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.0
+0.1
-0.1
+0.1
-0.5
pH
R2A_PIPES pH 4.5
-0.2
+0.0
-0.1
+0.3
-0.4
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
+0.2
+0.1
-0.1
-0.6
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.0
+0.2
+0.2
+0.1
-0.8
no stress control
no stress control
-0.1
+0.1
+0.1
-0.1
-0.5
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
+0.2
-0.0
+0.1
-0.6
no stress control
no stress control
-0.1
+0.1
+0.1
-0.0
-0.4
pH
R2A_PIPES pH 4.5
-0.2
+0.1
-0.0
+0.1
-0.4
no stress control
no stress control
-0.0
+0.1
+0.1
-0.0
-0.4
pH
R2A_PIPES pH 4.25
-0.3
+0.1
-0.1
+0.4
-0.2
no stress control
no stress control
-0.1
+0.1
+0.1
+0.0
-0.3
stress
R2A with Nickel (II) chloride 1696 uM
-0.0
+0.0
+0.0
+0.1
-0.3
no stress control
no stress control
-0.0
+0.0
+0.1
+0.1
-0.3
pH
R2A_PIPES pH 4.25
-0.2
+0.2
-0.1
+0.4
-0.4
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