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Cofit
Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS00380 and LRK55_RS00385 are separated by 10 nucleotides
LRK55_RS00385 and LRK55_RS00390 overlap by 1 nucleotides
LRK55_RS00390 and LRK55_RS00395 are separated by 180 nucleotides
LRK55_RS00395 and LRK55_RS00400 are separated by 57 nucleotides
LRK55_RS00380: LRK55_RS00380 - DUF2065 domain-containing protein, at 74,580 to 74,762
_RS00380
LRK55_RS00385: LRK55_RS00385 - protease modulator HflC, at 74,773 to 75,639
_RS00385
LRK55_RS00390: LRK55_RS00390 - FtsH protease activity modulator HflK, at 75,639 to 76,709
_RS00390
LRK55_RS00395: LRK55_RS00395 - GTPase HflX, at 76,890 to 78,191
_RS00395
LRK55_RS00400: LRK55_RS00400 - RNA chaperone Hfq, at 78,249 to 78,536
_RS00400
Group
Condition
LRK55
_RS00380
LRK55
_RS00385
LRK55
_RS00390
LRK55
_RS00395
LRK55
_RS00400
stress
R2A with Zinc chloride 2560 uM
-1.8
-3.5
-3.5
-1.6
-0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-2.3
-3.1
-3.5
-2.2
+0.6
stress
R2A with Zinc chloride 2560 uM
-1.0
-3.6
-4.0
-1.4
-0.0
stress
R2A with Nickel (II) chloride 1696 uM
-1.2
-3.3
-3.9
-1.1
+0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-1.0
-3.7
-3.5
-1.0
-0.2
no stress control
no stress control
-0.9
-3.3
-3.6
-0.8
-0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.5
-3.5
-3.8
-0.7
-0.3
no stress control
no stress control
-1.1
-3.1
-3.7
-0.6
-0.2
stress
R2A with Nickel (II) chloride 1696 uM
-0.6
-3.7
-3.8
-1.0
+0.2
no stress control
no stress control
-0.3
-3.3
-3.6
-1.1
-0.4
no stress control
no stress control
-1.0
-3.2
-3.7
-0.5
-0.2
pH
R2A_PIPES pH 4.5
-0.8
-3.6
-3.3
-0.9
-0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-1.2
-2.8
-3.3
-1.9
+0.6
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.7
-3.1
-3.4
-0.7
-0.5
no stress control
no stress control
-0.5
-3.2
-3.5
-0.9
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-1.0
-2.6
-3.4
-0.7
-0.6
pH
R2A_PIPES pH 4.5
-0.6
-3.2
-3.5
-0.7
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.6
-2.8
-3.3
-0.7
-0.4
no stress control
no stress control
-0.1
-3.3
-3.8
-0.3
-0.3
no stress control
no stress control
-0.3
-2.7
-3.7
-1.0
-0.0
pH
R2A_PIPES pH 4.25
-1.3
-3.0
-3.3
-1.7
+1.6
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.1
-2.9
-3.3
-0.9
-0.4
pH
R2A_PIPES pH 4.25
-0.6
-2.7
-2.9
-1.2
+1.3
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