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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS18085 and LRK54_RS18090 are separated by 196 nucleotides
LRK54_RS18090 and LRK54_RS18095 are separated by 9 nucleotides
LRK54_RS18095 and LRK54_RS18100 overlap by 23 nucleotides
LRK54_RS18100 and LRK54_RS18105 are separated by 0 nucleotides
LRK54_RS18085: LRK54_RS18085 - MBL fold metallo-hydrolase, at 3,947,892 to 3,948,815
_RS18085
LRK54_RS18090: LRK54_RS18090 - hypothetical protein, at 3,949,012 to 3,949,353
_RS18090
LRK54_RS18095: LRK54_RS18095 - DUF2231 domain-containing protein, at 3,949,363 to 3,949,791
_RS18095
LRK54_RS18100: LRK54_RS18100 - DNA-3-methyladenine glycosylase, at 3,949,769 to 3,950,416
_RS18100
LRK54_RS18105: LRK54_RS18105 - DNA oxidative demethylase AlkB, at 3,950,417 to 3,951,073
_RS18105
Group
Condition
LRK54
_RS18085
LRK54
_RS18090
LRK54
_RS18095
LRK54
_RS18100
LRK54
_RS18105
phage
1C-T1
-0.4
N.D.
-0.3
-0.4
-1.1
phage
1A-T1
-0.4
N.D.
-0.4
+0.2
-1.4
phage
phage 31.1
-0.2
N.D.
-0.4
-0.3
-0.8
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.1
N.D.
-0.0
-0.3
-1.3
stress
R2A_PIPES with Cobalt chloride 256 uM
-0.1
N.D.
-0.2
+0.2
-1.1
phage
3B-T1
-0.1
N.D.
-0.3
-0.2
-0.5
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
-0.0
N.D.
-0.0
+0.4
-0.8
phage
2B-T2
-0.2
N.D.
-0.3
-0.5
+0.7
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.3
N.D.
-0.3
+0.2
-0.6
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.5
N.D.
-0.3
-0.1
-0.4
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.1
N.D.
+0.3
+0.2
-0.7
phage
1D-T2
-0.2
N.D.
-0.4
-0.1
+0.7
phage
SA-T2
+0.1
N.D.
-0.3
-0.3
+0.5
stress
R2A with Selective_ion_mix_1 1 X
+0.2
N.D.
+0.4
-0.5
+0.2
phage
2F-T1
-0.2
N.D.
-0.3
+0.1
+0.6
phage
2F-T2
-0.2
N.D.
-0.2
-0.2
+1.0
stress
R2A with Other_metal_mix 1 X
-0.1
N.D.
-0.1
-0.1
+0.9
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.0
N.D.
-0.3
+0.2
+0.7
r2a_control
R2A control
+0.1
N.D.
-0.3
+0.0
+0.8
stress
R2A with Cobalt chloride 0.15625 mM
-0.2
N.D.
+0.1
+0.3
+0.6
stress
R2A_PIPES with Aluminum chloride 1.125 mM
+0.0
N.D.
+0.2
-0.2
+0.8
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
+0.2
N.D.
-0.2
+0.4
+0.4
stress
R2A with chromate 0.0048828125 mM
-0.3
N.D.
-0.2
+0.5
+0.9
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-0.2
N.D.
+0.1
+0.2
+0.8
phage
3E-T2
+0.2
N.D.
-0.2
+0.0
+1.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.4
N.D.
+0.1
+0.4
+0.3
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.3
N.D.
-0.1
-0.2
+1.3
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
-0.4
N.D.
+0.1
+0.0
+1.6
stress
R2A with Calcium chloride 250 mM
-0.1
N.D.
+0.2
+0.2
+1.1
stress
R2A_PIPES with Nickel (II) chloride 424 uM
+0.2
N.D.
+0.1
-0.1
+1.6
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