Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS18080 and LRK54_RS18085 are separated by 24 nucleotidesLRK54_RS18085 and LRK54_RS18090 are separated by 196 nucleotidesLRK54_RS18090 and LRK54_RS18095 are separated by 9 nucleotidesLRK54_RS18095 and LRK54_RS18100 overlap by 23 nucleotides LRK54_RS18080: LRK54_RS18080 - subclass B3 metallo-beta-lactamase, at 3,946,989 to 3,947,867 _RS18080 LRK54_RS18085: LRK54_RS18085 - MBL fold metallo-hydrolase, at 3,947,892 to 3,948,815 _RS18085 LRK54_RS18090: LRK54_RS18090 - hypothetical protein, at 3,949,012 to 3,949,353 _RS18090 LRK54_RS18095: LRK54_RS18095 - DUF2231 domain-containing protein, at 3,949,363 to 3,949,791 _RS18095 LRK54_RS18100: LRK54_RS18100 - DNA-3-methyladenine glycosylase, at 3,949,769 to 3,950,416 _RS18100
Group Condition LRK54_RS18080 LRK54_RS18085 LRK54_RS18090 LRK54_RS18095 LRK54_RS18100
phage 1C-T1 -0.3 -0.4 N.D. -0.3 -0.4
phage 2B-T2 +0.0 -0.2 N.D. -0.3 -0.5
phage 2A-T1 -0.2 -0.1 N.D. -0.6 -0.2
phage 1D-T2 -0.2 -0.2 N.D. -0.4 -0.1
phage 2B-T1 -0.3 -0.1 N.D. -0.0 -0.5
phage 2E-T1 -0.4 +0.0 N.D. -0.2 -0.3
phage 1A-T1 -0.4 -0.4 N.D. -0.4 +0.2
phage phage 31.1 +0.2 -0.2 N.D. -0.4 -0.3
phage SA-T2 -0.2 +0.1 N.D. -0.3 -0.3
stress R2A with chromate 0.0048828125 mM -0.2 -0.2 N.D. -0.3 +0.2
stress R2A with Selective_ion_mix_1 1 X -0.0 -0.1 N.D. -0.5 +0.2
phage S5-T2 +0.3 +0.0 N.D. -0.2 -0.4
stress R2A with chromate 0.0048828125 mM -0.1 -0.3 N.D. -0.2 +0.5
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.1 +0.5 N.D. -0.3 -0.1
stress R2A with Selective_ion_mix_1 1 X -0.0 +0.2 N.D. +0.4 -0.5
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.2 +0.3 N.D. -0.3 +0.2
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM +0.1 +0.1 N.D. +0.2 -0.4
no stress control no stress control +0.2 +0.2 N.D. +0.1 -0.3
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.3 -0.3 N.D. +0.2 +0.0
stress R2A with selenate 31.25 mM +0.2 -0.1 N.D. -0.3 +0.4
phage 4B-T2 +0.2 +0.0 N.D. -0.2 +0.4
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 -0.2 +0.2 N.D. +0.3 +0.3
carbon source acetate 20 mM +0.1 +0.3 N.D. -0.2 +0.4
r2a_control R2A control +0.2 -0.1 N.D. +0.3 +0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; +0.3 +0.1 N.D. -0.1 +0.4
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 +0.4 +0.2 N.D. -0.2 +0.4
carbon source Gly-Glu 20 mM +0.1 +0.3 N.D. +0.2 +0.2
carbon source D-Trehalose 20 mM +0.2 +0.1 N.D. +0.3 +0.3
phage 1E-T1 +0.3 +0.1 N.D. +0.1 +0.5
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.1 +0.4 N.D. +0.1 +0.4
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