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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS17600 and LRK54_RS17605 are separated by 91 nucleotides
LRK54_RS17605 and LRK54_RS17610 are separated by 9 nucleotides
LRK54_RS17610 and LRK54_RS17615 overlap by 4 nucleotides
LRK54_RS17615 and LRK54_RS17620 are separated by 580 nucleotides
LRK54_RS17600: LRK54_RS17600 - hypothetical protein, at 3,848,602 to 3,849,063
_RS17600
LRK54_RS17605: LRK54_RS17605 - cytochrome c, at 3,849,155 to 3,849,775
_RS17605
LRK54_RS17610: LRK54_RS17610 - copper resistance protein B, at 3,849,785 to 3,851,044
_RS17610
LRK54_RS17615: LRK54_RS17615 - copper resistance system multicopper oxidase, at 3,851,041 to 3,852,810
_RS17615
LRK54_RS17620: LRK54_RS17620 - hypothetical protein, at 3,853,391 to 3,853,720
_RS17620
Group
Condition
LRK54
_RS17600
LRK54
_RS17605
LRK54
_RS17610
LRK54
_RS17615
LRK54
_RS17620
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.1
+0.1
-0.3
-0.3
-3.2
stress
R2A with copper (II) chloride 0.3125 mM
+0.2
-0.3
-1.3
-1.5
-0.6
stress
R2A with copper (II) chloride 0.3125 mM
-0.3
-0.3
-1.2
-1.6
+0.3
stress
R2A with silver chloride 1 mM
-0.2
-0.9
-0.2
-0.6
-1.1
stress
R2A with Chloride 250 mM
-0.3
+0.1
-0.3
+0.0
-2.2
phage
phage 31.1
-0.1
-0.3
-0.1
-0.0
-2.0
stress
R2A with chromate 0.0048828125 mM
-1.1
-0.5
-0.3
-0.1
+0.2
stress
R2A with silver chloride 1 mM
-0.7
-0.5
-0.1
-0.5
+0.2
r2a_control
R2A control
-0.3
-0.3
-0.0
+0.0
-1.1
phage
1D-T2
-0.5
-0.1
-0.3
+0.0
-0.7
stress
R2A with nitrate 250 mM
-0.5
+0.1
-0.3
-0.0
-0.8
stress
R2A with Selective_ion_mix_1 1 X
-0.3
+0.1
-0.5
+0.2
-0.7
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-1.7
+0.6
+0.0
+0.1
-0.3
stress
R2A with lithium chloride 15.625 mM
-0.4
-0.2
+0.2
+0.0
-0.9
stress
R2A with Nickel (II) chloride 0.3125 mM
-1.1
-0.4
+0.0
+0.1
+0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-0.9
+0.5
+0.2
-0.1
-0.7
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-1.2
-0.2
-0.2
-0.0
+0.9
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.2
+0.2
-0.2
-0.1
-1.0
phage
1E-T1
-0.3
+0.5
-0.3
-0.3
-0.2
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
-0.9
-0.4
-0.1
+0.1
+0.8
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.8
-0.5
+0.0
-0.0
+0.9
no phage control
No phage control
+0.1
+0.3
+0.3
-0.0
-1.1
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
+0.7
-0.5
-0.2
+0.2
-0.2
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
+0.2
+0.5
+0.3
+0.0
-0.9
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.7
+0.3
+0.2
+0.1
-0.8
stress
R2A_PIPES with Aluminum chloride 1.125 mM
-0.6
+0.6
+0.1
+0.1
+0.7
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.7
-0.4
+0.4
-0.1
+0.3
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.4
+0.2
+0.3
+0.0
+0.8
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.5
+0.3
+0.3
+0.1
+0.4
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.5
+0.9
+0.1
+0.2
+0.0
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