Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS17015 and LRK54_RS17020 are separated by 165 nucleotidesLRK54_RS17020 and LRK54_RS17025 are separated by 160 nucleotidesLRK54_RS17025 and LRK54_RS17030 are separated by 83 nucleotidesLRK54_RS17030 and LRK54_RS17035 are separated by 12 nucleotides LRK54_RS17015: LRK54_RS17015 - hypoxanthine-guanine phosphoribosyltransferase, at 3,721,285 to 3,721,848 _RS17015 LRK54_RS17020: LRK54_RS17020 - S-methyl-5'-thioinosine phosphorylase, at 3,722,014 to 3,722,775 _RS17020 LRK54_RS17025: LRK54_RS17025 - cold-shock protein, at 3,722,936 to 3,723,139 _RS17025 LRK54_RS17030: LRK54_RS17030 - N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase, at 3,723,223 to 3,724,272 _RS17030 LRK54_RS17035: LRK54_RS17035 - copper homeostasis protein CutC, at 3,724,285 to 3,725,010 _RS17035
Group Condition LRK54_RS17015 LRK54_RS17020 LRK54_RS17025 LRK54_RS17030 LRK54_RS17035
stress R2A_PIPES with Nickel (II) chloride 424 uM +0.0 +0.0 -3.9 +0.0 -0.2
pH R2A_PIPES pH 4.25 -0.2 +0.1 -4.1 -0.3 +0.5
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM -0.4 +0.0 -2.5 -0.0 -0.1
carbon source a-Cyclodextrin 20 mM +0.5 +0.6 -4.1 -0.1 +0.0
carbon source D-Glucose-6-Phosphate 20 mM +0.1 +0.1 -3.0 -0.1 +0.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; -0.3 -0.1 -1.9 -0.2 -0.3
phage 1B-T1 -0.1 -0.0 -3.0 -0.1 +0.6
phage 3B-T1 -0.2 -0.2 -1.3 -0.1 -0.9
phage 4B-T2 -0.1 -0.1 -2.9 -0.5 +1.1
stress R2A with Aluminum chloride 3.125 mM +0.1 +0.0 -2.5 -0.1 +0.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.3 +0.1 -2.1 -0.0 -0.0
biofilm assay; biofilm sample biofilm; Day1; NLDM; -0.0 +0.1 -2.0 +0.2 -0.6
stress R2A with Other_metal_mix 1 X -0.2 +0.1 -1.8 +0.2 -0.3
phage 3C-T2 -0.2 +0.0 -1.5 -0.5 +0.4
no stress control no stress control +0.3 +0.1 -1.9 -0.0 -0.1
stress R2A with Aluminum chloride 3.125 mM +0.3 -0.1 -1.9 -0.1 +0.2
stress R2A with Manganese (II) chloride tetrahydrate 1.25 mM +0.4 +0.1 -1.8 +0.1 -0.4
stress R2A_PIPES with Aluminum chloride 1.125 mM -0.1 -0.3 -1.5 +0.3 +0.2
phage 2B-T2 +0.0 -0.0 -1.5 -0.3 +0.5
stress R2A with arsenate 15.625 mM -0.1 +0.2 -1.9 +0.0 +0.3
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 +0.1 +0.3 -2.0 +0.3 -0.0
carbon source a-Cyclodextrin 20 mM +0.3 +0.2 -2.0 +0.1 +0.1
stress R2A with SpecU metal mix 1 X -1.8 +0.1 +0.3 -0.0 +0.4
stress R2A with Calcium chloride 125 mM -0.8 -0.1 +0.6 +0.1 -0.7
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 +0.2 +0.3 -1.8 +0.1 +0.4
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM -0.1 -0.0 -1.6 +0.1 +0.8
stress R2A with SpecU metal mix 1 X -1.7 +0.3 +1.0 -0.2 +0.5
stress R2A with silver chloride 1 mM -1.1 +0.2 +1.1 +0.1 -0.3
stress R2A with Calcium chloride 125 mM -0.7 +0.0 +1.0 +0.2 -0.4
phage 2A-T2 +0.0 +0.2 +1.0 -0.5 +1.0
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