Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS16625 and LRK54_RS16630 are separated by 10 nucleotidesLRK54_RS16630 and LRK54_RS16635 overlap by 4 nucleotidesLRK54_RS16635 and LRK54_RS16640 are separated by 105 nucleotidesLRK54_RS16640 and LRK54_RS16645 are separated by 96 nucleotides LRK54_RS16625: LRK54_RS16625 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 3,651,716 to 3,652,414 _RS16625 LRK54_RS16630: LRK54_RS16630 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 3,652,425 to 3,652,898 _RS16630 LRK54_RS16635: LRK54_RS16635 - magnesium transporter, at 3,652,895 to 3,654,289 _RS16635 LRK54_RS16640: LRK54_RS16640 - tRNA pseudouridine(13) synthase TruD, at 3,654,395 to 3,655,405 _RS16640 LRK54_RS16645: LRK54_RS16645 - Smr/MutS family protein, at 3,655,502 to 3,656,047 _RS16645
Group Condition LRK54_RS16625 LRK54_RS16630 LRK54_RS16635 LRK54_RS16640 LRK54_RS16645
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 N.D. N.D. -0.5 -1.0 -0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM N.D. N.D. -0.6 -0.5 -0.3
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM N.D. N.D. -0.5 -0.7 +0.1
stress R2A_PIPES with Nickel (II) chloride 424 uM N.D. N.D. +0.0 -1.0 +0.3
stress R2A with Nickel (II) chloride 0.3125 mM N.D. N.D. -1.3 +0.9 +0.5
carbon source a-Cyclodextrin 20 mM N.D. N.D. -0.4 +0.8 -0.3
stress R2A with Calcium chloride 125 mM N.D. N.D. -0.6 +0.4 +0.4
stress R2A with bismuth(III) chloride 0.03125 mM N.D. N.D. -0.6 +0.3 +0.5
phage 3E-T2 N.D. N.D. +0.3 -0.5 +0.8
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM N.D. N.D. -0.1 +1.1 -0.1
stress R2A_PIPES with Cobalt chloride 256 uM N.D. N.D. +1.1 +0.2 -0.1
stress R2A with Manganese (II) chloride tetrahydrate 2.5 mM N.D. N.D. +1.1 +0.2 +0.0
stress R2A with Manganese (II) chloride tetrahydrate 1.25 mM N.D. N.D. +1.1 -0.0 +0.3
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors N.D. N.D. +1.2 +0.4 -0.2
stress R2A with Cobalt chloride 0.078125 mM N.D. N.D. +1.3 +0.3 -0.0
stress R2A with Cobalt chloride 0.078125 mM N.D. N.D. +1.5 +0.1 +0.0
stress R2A with beryllium sulfate tetrahydrate 1.953125 mM N.D. N.D. +1.1 +0.3 +0.3
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors N.D. N.D. +1.4 +0.1 +0.3
stress R2A with beryllium sulfate tetrahydrate 1.953125 mM N.D. N.D. +1.3 +0.5 +0.0
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x N.D. N.D. +2.0 +0.1 -0.1
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x N.D. N.D. +2.2 -0.3 +0.2
stress R2A with Manganese (II) chloride tetrahydrate 2.5 mM N.D. N.D. +1.8 +0.3 +0.1
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM N.D. N.D. +2.3 +0.2 -0.2
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM N.D. N.D. +2.2 +0.4 +0.1
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM N.D. N.D. +2.9 +0.3 +0.7
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM N.D. N.D. +3.3 +1.0 -0.1
stress R2A with Nickel (II) chloride 0.625 mM N.D. N.D. +5.1 +0.1 -0.3
stress R2A with Nickel (II) chloride 0.625 mM N.D. N.D. +5.2 -0.1 +0.2
stress R2A with Cobalt chloride 0.15625 mM N.D. N.D. +6.7 +0.2 +0.3
stress R2A with Cobalt chloride 0.15625 mM N.D. N.D. +6.9 +0.9 +0.1
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