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Cofit
Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS16550 and LRK54_RS16555 are separated by 151 nucleotides
LRK54_RS16555 and LRK54_RS16560 are separated by 152 nucleotides
LRK54_RS16560 and LRK54_RS16565 are separated by 46 nucleotides
LRK54_RS16565 and LRK54_RS16570 are separated by 403 nucleotides
LRK54_RS16550: LRK54_RS16550 - VOC family protein, at 3,633,020 to 3,633,448
_RS16550
LRK54_RS16555: LRK54_RS16555 - patatin-like phospholipase family protein, at 3,633,600 to 3,634,484
_RS16555
LRK54_RS16560: LRK54_RS16560 - FAD-binding oxidoreductase, at 3,634,637 to 3,636,469
_RS16560
LRK54_RS16565: LRK54_RS16565 - cbb3-type cytochrome c oxidase subunit I, at 3,636,516 to 3,638,813
_RS16565
LRK54_RS16570: LRK54_RS16570 - iron-containing redox enzyme family protein, at 3,639,217 to 3,639,993
_RS16570
Group
Condition
LRK54
_RS16550
LRK54
_RS16555
LRK54
_RS16560
LRK54
_RS16565
LRK54
_RS16570
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-0.8
-0.7
-0.1
+0.0
-0.0
stress
R2A with chromate 0.0048828125 mM
-1.2
-0.2
-0.0
-0.3
+0.2
phage
3C-T2
-1.2
+0.1
+0.1
-0.2
-0.2
stress
R2A with Zinc chloride 0.625 mM
-0.7
-0.2
+0.0
+0.5
-0.6
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.7
-0.2
+0.5
+0.1
-0.5
stress
R2A with m-arsenite 0.0390625 mM
-0.7
+0.0
+0.1
+0.4
-0.8
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-1.1
+0.1
-0.1
+0.7
-0.4
stress
R2A with Cadmium chloride hemipentahydrate 0.0390625 mM
-0.5
-0.2
+0.1
+0.4
-0.6
phage
2E-T1
-0.4
+0.3
-0.4
-0.1
-0.2
phage
4E-T1
-1.0
+0.3
+0.1
-0.0
-0.2
stress
R2A with nitrite 50 mM
-0.3
+0.0
-0.0
+0.5
-1.0
stress
R2A with Selective_ion_mix_1 1 X
-0.9
-0.2
+0.2
-0.1
+0.2
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-1.1
+0.1
-0.0
+0.3
-0.1
stress
R2A with m-arsenite 0.078125 mM
-0.6
-0.0
+0.1
+0.7
-0.9
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
-0.2
-0.4
+0.3
-0.5
+0.2
phage
2F-T2
-0.8
+0.5
-0.0
-0.1
-0.3
stress
R2A with Cadmium chloride hemipentahydrate 0.01953125 mM
-0.6
+0.1
-0.1
+0.3
-0.3
stress
R2A with nitrite 25 mM
-0.2
-0.1
-0.0
+0.5
-0.7
stress
R2A with m-arsenite 0.078125 mM
-0.4
+0.2
-0.0
+0.7
-1.0
stress
R2A with Zinc chloride 0.625 mM
-0.6
-0.0
+0.2
+0.4
-0.5
stress
R2A with copper (II) chloride 0.3125 mM
+0.2
-0.3
+0.0
+0.2
-0.7
stress
R2A with nitrite 25 mM
-0.4
-0.1
+0.2
+0.6
-0.7
stress
R2A with m-arsenite 0.0390625 mM
-0.1
+0.0
-0.0
+0.5
-0.8
stress
R2A with Chloride 250 mM
+0.4
+0.2
+0.0
-0.6
-0.3
carbon source
D-Glucose 20 mM
-0.2
+0.1
-0.1
+0.6
-0.4
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.4
-0.1
+0.2
+0.5
-0.3
stress
R2A with nitrite 50 mM
-0.1
+0.3
+0.1
+0.5
-0.7
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.2
+0.1
+0.1
+0.8
-0.6
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.4
+0.0
+0.1
+0.3
-0.5
stress
R2A with Selective_ion_mix_1 1 X
+0.9
-0.4
+0.1
-0.2
+0.2
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