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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS16470 and LRK54_RS16475 overlap by 11 nucleotides
LRK54_RS16475 and LRK54_RS16480 are separated by 123 nucleotides
LRK54_RS16480 and LRK54_RS16485 are separated by 145 nucleotides
LRK54_RS16485 and LRK54_RS16490 are separated by 15 nucleotides
LRK54_RS16470: LRK54_RS16470 - metalloregulator ArsR/SmtB family transcription factor, at 3,615,736 to 3,616,083
_RS16470
LRK54_RS16475: LRK54_RS16475 - SRPBCC family protein, at 3,616,073 to 3,616,546
_RS16475
LRK54_RS16480: LRK54_RS16480 - NAD-dependent protein deacetylase, at 3,616,670 to 3,617,503
_RS16480
LRK54_RS16485: LRK54_RS16485 - amidohydrolase family protein, at 3,617,649 to 3,619,145
_RS16485
LRK54_RS16490: LRK54_RS16490 - GNAT family N-acetyltransferase, at 3,619,161 to 3,619,838
_RS16490
Group
Condition
LRK54
_RS16470
LRK54
_RS16475
LRK54
_RS16480
LRK54
_RS16485
LRK54
_RS16490
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-1.2
+0.1
-0.4
-0.3
-0.3
phage
3E-T1
+0.1
-1.1
-0.4
+0.3
-0.2
carbon source
D-Glucose-6-Phosphate 20 mM
-0.4
-0.6
-0.4
+0.0
+0.2
carbon source
Gly-Glu 20 mM
-1.0
-0.2
-0.1
+0.1
+0.0
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.5
-1.3
+0.3
+0.3
+0.2
no stress control
no stress control
-1.0
+0.3
-0.1
-0.3
+0.3
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.6
-0.5
+0.3
+0.0
-0.0
phage
1A-T2
+0.5
-0.1
-0.7
-0.3
+0.0
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.6
+0.4
-0.0
+0.1
-0.4
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
-0.4
+0.3
-0.7
+0.0
+0.3
phage
phage 31.1
-0.2
+1.1
-0.5
-0.5
-0.4
stress
R2A with Cobalt chloride 0.15625 mM
+0.4
-0.5
-0.5
+0.1
-0.0
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.4
-0.6
+0.1
-0.5
+0.3
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
+0.9
-0.8
-0.4
+0.5
-0.6
phage
1E-T2
+0.6
-0.7
-0.1
-0.1
-0.0
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
-1.0
+0.7
+0.0
+0.2
-0.1
phage
1E-T1
+0.3
-0.5
-0.5
+0.3
+0.2
no phage control
No phage control
+0.6
-0.6
-0.1
+0.0
+0.1
no stress control
no stress control
-0.7
+0.1
+0.5
-0.0
+0.0
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
+0.7
-0.3
-0.1
-0.4
+0.1
phage
1B-T1
-0.5
+0.3
+0.4
+0.1
-0.3
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
-0.2
-0.1
+0.5
-0.4
+0.3
phage
SA-T1
+0.5
+0.1
-0.7
+0.2
+0.1
phage
3C-T2
-0.1
-0.5
+0.5
+0.2
+0.0
phage
4E-T2
-0.3
-0.5
+0.4
+0.4
+0.4
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
-0.6
+0.5
+0.2
+0.4
+0.1
phage
1C-T2
+0.4
-0.4
+0.7
-0.1
+0.2
phage
S3-T1
+0.5
-0.7
+0.6
+0.0
+0.5
stress
R2A with Cobalt chloride 0.15625 mM
+0.8
-0.1
-0.0
+0.0
+0.4
stress
R2A with chromate 0.0048828125 mM
+0.9
-0.1
+0.4
-0.1
+0.2
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