Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS16470 and LRK54_RS16475 overlap by 11 nucleotidesLRK54_RS16475 and LRK54_RS16480 are separated by 123 nucleotidesLRK54_RS16480 and LRK54_RS16485 are separated by 145 nucleotidesLRK54_RS16485 and LRK54_RS16490 are separated by 15 nucleotides LRK54_RS16470: LRK54_RS16470 - metalloregulator ArsR/SmtB family transcription factor, at 3,615,736 to 3,616,083 _RS16470 LRK54_RS16475: LRK54_RS16475 - SRPBCC family protein, at 3,616,073 to 3,616,546 _RS16475 LRK54_RS16480: LRK54_RS16480 - NAD-dependent protein deacetylase, at 3,616,670 to 3,617,503 _RS16480 LRK54_RS16485: LRK54_RS16485 - amidohydrolase family protein, at 3,617,649 to 3,619,145 _RS16485 LRK54_RS16490: LRK54_RS16490 - GNAT family N-acetyltransferase, at 3,619,161 to 3,619,838 _RS16490
Group Condition LRK54_RS16470 LRK54_RS16475 LRK54_RS16480 LRK54_RS16485 LRK54_RS16490
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -1.2 +0.1 -0.4 -0.3 -0.3
phage 3E-T1 +0.1 -1.1 -0.4 +0.3 -0.2
carbon source D-Glucose-6-Phosphate 20 mM -0.4 -0.6 -0.4 +0.0 +0.2
carbon source Gly-Glu 20 mM -1.0 -0.2 -0.1 +0.1 +0.0
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.5 -1.3 +0.3 +0.3 +0.2
no stress control no stress control -1.0 +0.3 -0.1 -0.3 +0.3
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.6 -0.5 +0.3 +0.0 -0.0
phage 1A-T2 +0.5 -0.1 -0.7 -0.3 +0.0
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.6 +0.4 -0.0 +0.1 -0.4
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM -0.4 +0.3 -0.7 +0.0 +0.3
phage phage 31.1 -0.2 +1.1 -0.5 -0.5 -0.4
stress R2A with Cobalt chloride 0.15625 mM +0.4 -0.5 -0.5 +0.1 -0.0
stress R2A with bismuth(III) chloride 0.03125 mM +0.4 -0.6 +0.1 -0.5 +0.3
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 +0.9 -0.8 -0.4 +0.5 -0.6
phage 1E-T2 +0.6 -0.7 -0.1 -0.1 -0.0
biofilm assay; planktonic sample planktonic; Day1; NLDM; -1.0 +0.7 +0.0 +0.2 -0.1
phage 1E-T1 +0.3 -0.5 -0.5 +0.3 +0.2
no phage control No phage control +0.6 -0.6 -0.1 +0.0 +0.1
no stress control no stress control -0.7 +0.1 +0.5 -0.0 +0.0
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +0.7 -0.3 -0.1 -0.4 +0.1
phage 1B-T1 -0.5 +0.3 +0.4 +0.1 -0.3
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 -0.2 -0.1 +0.5 -0.4 +0.3
phage SA-T1 +0.5 +0.1 -0.7 +0.2 +0.1
phage 3C-T2 -0.1 -0.5 +0.5 +0.2 +0.0
phage 4E-T2 -0.3 -0.5 +0.4 +0.4 +0.4
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM -0.6 +0.5 +0.2 +0.4 +0.1
phage 1C-T2 +0.4 -0.4 +0.7 -0.1 +0.2
phage S3-T1 +0.5 -0.7 +0.6 +0.0 +0.5
stress R2A with Cobalt chloride 0.15625 mM +0.8 -0.1 -0.0 +0.0 +0.4
stress R2A with chromate 0.0048828125 mM +0.9 -0.1 +0.4 -0.1 +0.2
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