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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS16230 and LRK54_RS16235 are separated by 315 nucleotides
LRK54_RS16235 and LRK54_RS16240 are separated by 93 nucleotides
LRK54_RS16240 and LRK54_RS16245 are separated by 79 nucleotides
LRK54_RS16245 and LRK54_RS16250 overlap by 4 nucleotides
LRK54_RS16230: LRK54_RS16230 - imidazolonepropionase, at 3,569,427 to 3,570,689
_RS16230
LRK54_RS16235: LRK54_RS16235 - bifunctional GNAT family N-acetyltransferase/carbon-nitrogen hydrolase family protein, at 3,571,005 to 3,572,564
_RS16235
LRK54_RS16240: LRK54_RS16240 - formimidoylglutamate deiminase, at 3,572,658 to 3,574,028
_RS16240
LRK54_RS16245: LRK54_RS16245 - ABC transporter ATP-binding protein, at 3,574,108 to 3,574,839
_RS16245
LRK54_RS16250: LRK54_RS16250 - FtsX-like permease family protein, at 3,574,836 to 3,577,202
_RS16250
Group
Condition
LRK54
_RS16230
LRK54
_RS16235
LRK54
_RS16240
LRK54
_RS16245
LRK54
_RS16250
r2a_control
R2A control
-0.6
-0.4
-1.6
-0.5
-0.4
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
-0.4
-0.5
-0.7
-0.5
-1.2
stress
R2A with silver chloride 1 mM
-0.5
-0.2
-1.5
-0.9
-0.1
stress
R2A with Uranyl acetate 2.5 mM
-0.3
-0.3
-1.5
-0.7
-0.3
stress
R2A with selenate 31.25 mM
-0.7
-0.1
-1.6
-0.5
-0.1
stress
R2A with sodium bromide 250 mM
-0.4
-0.1
-1.6
-0.6
-0.1
stress
R2A with Cesium chloride 3.90625 mM
-0.3
-0.0
-1.8
-0.3
-0.2
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.3
+0.1
-1.3
-0.9
-0.1
stress
R2A with Chloride 250 mM
-0.4
-0.1
-1.7
-0.5
+0.1
stress
R2A with Chloride 250 mM
-0.4
-0.1
-1.7
-0.3
-0.0
stress
R2A with Calcium chloride 250 mM
-0.1
-0.3
-1.2
-0.6
-0.3
stress
R2A with Chloride 250 mM
-0.1
-0.1
-1.8
-0.4
-0.1
r2a_control
R2A control
-0.3
-0.2
-1.4
-0.4
-0.2
stress
R2A with sulfate 250 mM
-0.4
-0.2
-1.4
-0.4
-0.1
stress
R2A with ammonium iron(II) sulfate 2.5 mM
-0.4
-0.2
-1.6
-0.3
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.6
-0.3
-0.6
-0.4
-0.5
stress
R2A with sodium bromide 250 mM
-0.4
-0.1
-1.6
-0.3
-0.1
r2a_control
R2A control
-0.4
-0.1
-1.5
-0.4
+0.0
stress
R2A with lead(II) chloride 0.625 mM
-0.1
-0.0
-1.5
-0.6
-0.1
stress
R2A with Gallium(III)chloride 0.78125 mM
+0.0
-0.1
-1.5
-0.7
-0.1
stress
R2A with Calcium chloride 250 mM
-0.3
-0.2
-1.2
-0.7
-0.0
stress
R2A with mercury (II) chloride 0.009765625 mM
-0.1
+0.0
-1.5
-0.5
-0.1
stress
R2A with ammonium iron(II) sulfate 2.5 mM
-0.2
-0.0
-1.3
-0.6
-0.0
stress
R2A with beryllium sulfate tetrahydrate 1.953125 mM
-0.3
-0.1
-1.2
-0.4
-0.1
stress
R2A with Strontium chloride 3.90625 mM
-0.3
+0.0
-1.0
-0.7
-0.1
stress
R2A with Cesium chloride 3.90625 mM
+0.1
-0.0
-1.8
-0.3
+0.0
stress
R2A with selenate 31.25 mM
-0.2
+0.1
-1.3
-0.6
-0.1
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
+0.4
-0.2
-0.4
-1.2
-0.2
carbon source
a-Cyclodextrin 20 mM
-0.3
+0.1
-0.3
+2.1
+0.5
carbon source
a-Cyclodextrin 20 mM
-0.2
+0.1
-0.0
+2.0
+0.4
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