Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS16180 and LRK54_RS16185 are separated by 103 nucleotidesLRK54_RS16185 and LRK54_RS16190 overlap by 29 nucleotidesLRK54_RS16190 and LRK54_RS16195 are separated by 98 nucleotidesLRK54_RS16195 and LRK54_RS16200 are separated by 7 nucleotides LRK54_RS16180: LRK54_RS16180 - succinate dehydrogenase iron-sulfur subunit, at 3,559,467 to 3,560,249 _RS16180 LRK54_RS16185: LRK54_RS16185 - succinate dehydrogenase assembly factor 2, at 3,560,353 to 3,560,601 _RS16185 LRK54_RS16190: LRK54_RS16190 - hypothetical protein, at 3,560,573 to 3,561,010 _RS16190 LRK54_RS16195: LRK54_RS16195 - lipoprotein-releasing ABC transporter permease subunit, at 3,561,109 to 3,562,350 _RS16195 LRK54_RS16200: LRK54_RS16200 - lipoprotein-releasing ABC transporter ATP-binding protein LolD, at 3,562,358 to 3,563,056 _RS16200
Group Condition LRK54_RS16180 LRK54_RS16185 LRK54_RS16190 LRK54_RS16195 LRK54_RS16200
phage phage 31.1 N.D. N.D. -0.9 N.D. N.D.
pH R2A_PIPES pH 4.25 N.D. N.D. -0.9 N.D. N.D.
carbon source D-Glucose-6-Phosphate 20 mM N.D. N.D. -0.9 N.D. N.D.
stress R2A with Nickel (II) chloride 0.3125 mM N.D. N.D. -0.7 N.D. N.D.
biofilm assay; planktonic sample planktonic; Day1; NLDM; N.D. N.D. -0.7 N.D. N.D.
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM N.D. N.D. -0.7 N.D. N.D.
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM N.D. N.D. -0.7 N.D. N.D.
no stress control no stress control N.D. N.D. -0.6 N.D. N.D.
biofilm assay; planktonic sample planktonic; Day2; NLDM; N.D. N.D. -0.6 N.D. N.D.
biofilm assay; biofilm sample biofilm; Day2; NLDM; N.D. N.D. -0.6 N.D. N.D.
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM N.D. N.D. -0.6 N.D. N.D.
stress R2A with Zinc chloride 0.625 mM N.D. N.D. -0.6 N.D. N.D.
phage 2E-T2 N.D. N.D. -0.6 N.D. N.D.
stress R2A with Chloride 250 mM N.D. N.D. -0.5 N.D. N.D.
stress R2A with Manganese (II) chloride tetrahydrate 1.25 mM N.D. N.D. -0.5 N.D. N.D.
carbon source a-Cyclodextrin 20 mM N.D. N.D. -0.5 N.D. N.D.
stress R2A with Gallium(III)chloride 0.78125 mM N.D. N.D. -0.5 N.D. N.D.
carbon source D-Raffinose 20 mM N.D. N.D. -0.5 N.D. N.D.
stress R2A with arsenate 31.25 mM N.D. N.D. -0.5 N.D. N.D.
no stress control no stress control N.D. N.D. -0.5 N.D. N.D.
stress R2A_PIPES with Cobalt chloride 256 uM N.D. N.D. -0.5 N.D. N.D.
biofilm assay; biofilm sample biofilm; Day2; NLDM; N.D. N.D. -0.4 N.D. N.D.
phage 4B-T2 N.D. N.D. +0.4 N.D. N.D.
phage 1E-T2 N.D. N.D. +0.4 N.D. N.D.
phage 2B-T2 N.D. N.D. +0.4 N.D. N.D.
carbon source D-Glucose (C) and 20 AA mix; 30C N.D. N.D. +0.5 N.D. N.D.
phage SA-T1 N.D. N.D. +0.5 N.D. N.D.
stress R2A with sodium bromide 250 mM N.D. N.D. +0.5 N.D. N.D.
stress R2A with Selective_ion_mix_1 1 X N.D. N.D. +0.5 N.D. N.D.
carbon source acetate 20 mM N.D. N.D. +0.6 N.D. N.D.
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