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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS16105 and LRK54_RS16110 are separated by 115 nucleotides
LRK54_RS16110 and LRK54_RS16115 are separated by 76 nucleotides
LRK54_RS16115 and LRK54_RS16120 are separated by 11 nucleotides
LRK54_RS16120 and LRK54_RS16125 overlap by 14 nucleotides
LRK54_RS16105: LRK54_RS16105 - acetoacetyl-CoA reductase, at 3,546,237 to 3,546,998
_RS16105
LRK54_RS16110: LRK54_RS16110 - polyhydroxyalkanoate synthesis repressor PhaR, at 3,547,114 to 3,547,611
_RS16110
LRK54_RS16115: LRK54_RS16115 - DHA2 family efflux MFS transporter permease subunit, at 3,547,688 to 3,549,250
_RS16115
LRK54_RS16120: LRK54_RS16120 - efflux RND transporter periplasmic adaptor subunit, at 3,549,262 to 3,550,470
_RS16120
LRK54_RS16125: LRK54_RS16125 - efflux transporter outer membrane subunit, at 3,550,457 to 3,551,935
_RS16125
Group
Condition
LRK54
_RS16105
LRK54
_RS16110
LRK54
_RS16115
LRK54
_RS16120
LRK54
_RS16125
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.5
-3.8
-0.9
-0.3
-0.5
stress
R2A with Calcium chloride 250 mM
+0.1
-2.7
-0.7
-0.5
-0.9
pH
R2A_PIPES pH 4
-0.1
-2.6
-0.2
-0.4
-0.2
stress
R2A with Magnesium sulfate 3.90625 mM
+0.1
-3.1
-0.2
-0.1
-0.1
stress
R2A with lithium chloride 15.625 mM
+0.2
-2.0
-0.6
-0.6
-0.4
stress
R2A with Nickel (II) chloride 0.3125 mM
+0.1
-3.2
-0.0
+0.2
-0.4
stress
R2A with Calcium chloride 125 mM
-0.1
-2.1
-0.3
-0.4
-0.5
stress
R2A with Magnesium sulfate 3.90625 mM
-0.1
-2.5
-0.1
-0.3
-0.2
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
+0.0
-1.1
-0.6
-0.8
-0.7
stress
R2A with Calcium chloride 125 mM
+0.1
-1.8
-0.4
-0.7
-0.3
pH
R2A_PIPES pH 4
-0.3
-2.3
-0.2
-0.3
+0.0
stress
R2A with Cesium chloride 3.90625 mM
-0.0
-2.5
-0.2
-0.3
+0.0
stress
R2A with Chloride 250 mM
+0.2
-2.0
-0.3
-0.5
-0.3
stress
R2A with Calcium chloride 250 mM
+0.0
-1.8
-0.3
-0.5
-0.4
stress
R2A with ammonium iron(II) sulfate 2.5 mM
+0.2
-2.5
-0.2
-0.2
-0.2
stress
R2A with Uranyl acetate 2.5 mM
+0.2
-2.5
-0.1
-0.2
-0.2
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.2
-1.0
-0.4
-0.7
-0.7
stress
R2A with sulfate 250 mM
+0.2
-1.8
-0.4
-0.4
-0.3
stress
R2A with sodium bromide 250 mM
+0.3
-1.8
-0.4
-0.4
-0.4
stress
R2A with Ferric chloride 1.5625 mM
+0.3
-2.3
-0.3
-0.1
-0.3
stress
R2A with SpecU metal mix 1 X
+0.2
-1.6
-0.5
-0.3
-0.4
stress
R2A with Chloride 250 mM
+0.1
-1.5
-0.4
-0.4
-0.4
stress
R2A with Gallium(III)chloride 0.78125 mM
+0.4
-2.8
-0.1
-0.2
+0.1
stress
R2A with sodium bromide 250 mM
+0.1
-1.7
-0.3
-0.4
-0.3
r2a_control
R2A control
+0.1
-2.2
-0.2
-0.1
-0.1
stress
R2A with lithium chloride 15.625 mM
+0.2
-2.1
-0.3
-0.0
-0.2
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.3
-2.1
-0.3
-0.3
-0.0
stress
R2A with Chloride 250 mM
+0.5
-1.7
-0.3
-0.6
-0.3
r2a_control
R2A control
+0.3
-2.0
-0.1
-0.1
-0.2
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.3
-2.4
+0.2
+0.6
+0.3
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