Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS15870 and LRK54_RS15875 are separated by 221 nucleotidesLRK54_RS15875 and LRK54_RS15880 are separated by 24 nucleotidesLRK54_RS15880 and LRK54_RS15885 are separated by 309 nucleotidesLRK54_RS15885 and LRK54_RS15890 are separated by 103 nucleotides LRK54_RS15870: LRK54_RS15870 - Ig-like domain-containing protein, at 3,496,966 to 3,497,490 _RS15870 LRK54_RS15875: LRK54_RS15875 - ion channel, at 3,497,712 to 3,498,425 _RS15875 LRK54_RS15880: LRK54_RS15880 - HDOD domain-containing protein, at 3,498,450 to 3,499,469 _RS15880 LRK54_RS15885: LRK54_RS15885 - rRNA pseudouridine synthase, at 3,499,779 to 3,500,501 _RS15885 LRK54_RS15890: LRK54_RS15890 - LLM class flavin-dependent oxidoreductase, at 3,500,605 to 3,501,603 _RS15890
Group Condition LRK54_RS15870 LRK54_RS15875 LRK54_RS15880 LRK54_RS15885 LRK54_RS15890
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 +0.1 +0.1 -0.3 -0.4 -1.7
pH R2A_PIPES pH 4.25 +0.3 -0.1 -0.7 -0.5 -0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.2 -0.2 +0.1 -0.7 -0.1
phage 1D-T2 -0.3 +0.2 -0.2 -0.2 -0.3
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 +0.0 +0.1 +0.1 -0.6 -0.3
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x +0.1 -0.1 +0.1 -0.5 -0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.0 -0.1 +0.4 -0.5 -0.3
stress R2A with bismuth(III) chloride 0.03125 mM -0.5 -0.2 -0.3 -0.0 +0.5
stress R2A with lithium chloride 15.625 mM +0.1 -0.1 +0.3 -0.7 +0.1
stress R2A with Ferric chloride 1.5625 mM -0.4 -0.1 +0.2 -0.3 +0.2
stress R2A with Selective_ion_mix_1 1 X -0.4 -0.2 +0.3 +0.2 -0.2
stress R2A with Chloride 250 mM -0.2 -0.1 +0.5 -0.3 -0.2
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM +0.4 +0.1 -0.5 -0.3 +0.0
stress R2A with sulfate 250 mM -0.3 -0.0 +0.3 -0.3 +0.1
phage 1E-T1 -0.0 +0.3 -0.5 -0.4 +0.4
phage 3C-T2 -0.2 -0.2 +0.1 -0.3 +0.4
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.0 -0.2 -0.2 -0.2 +0.6
anaerobic Anaerobic, acetate donor; nitrate electron acceptor +0.5 -0.1 -0.3 -0.2 +0.1
stress R2A with Nickel (II) chloride 0.3125 mM +0.2 -0.2 +0.6 -0.3 -0.2
stress R2A with Calcium chloride 125 mM +0.2 -0.1 +0.3 -0.5 +0.2
stress R2A with Cesium chloride 3.90625 mM +0.2 -0.0 +0.1 -0.5 +0.4
carbon source acetate 20 mM +0.4 +0.1 -0.2 -0.4 +0.3
phage phage 31.1 +0.7 +0.0 +0.1 -0.1 -0.4
stress R2A_PIPES with Aluminum chloride 1.125 mM +0.5 +0.2 -0.7 -0.3 +0.7
stress R2A with chromate 0.0048828125 mM +0.3 -0.2 +0.4 +0.3 -0.4
carbon source a-Cyclodextrin 20 mM +0.5 -0.1 -0.0 -0.2 +0.3
carbon source a-Cyclodextrin 20 mM +0.7 -0.2 +0.1 -0.5 +0.8
stress R2A with Selective_ion_mix_1 1 X +0.2 -0.2 +0.1 +0.5 +0.3
phage 4B-T2 +0.3 -0.2 -0.0 +0.5 +0.3
stress R2A with Cobalt chloride 0.15625 mM +0.8 -0.0 +0.2 +0.2 +0.2
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