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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS15870 and LRK54_RS15875 are separated by 221 nucleotides
LRK54_RS15875 and LRK54_RS15880 are separated by 24 nucleotides
LRK54_RS15880 and LRK54_RS15885 are separated by 309 nucleotides
LRK54_RS15885 and LRK54_RS15890 are separated by 103 nucleotides
LRK54_RS15870: LRK54_RS15870 - Ig-like domain-containing protein, at 3,496,966 to 3,497,490
_RS15870
LRK54_RS15875: LRK54_RS15875 - ion channel, at 3,497,712 to 3,498,425
_RS15875
LRK54_RS15880: LRK54_RS15880 - HDOD domain-containing protein, at 3,498,450 to 3,499,469
_RS15880
LRK54_RS15885: LRK54_RS15885 - rRNA pseudouridine synthase, at 3,499,779 to 3,500,501
_RS15885
LRK54_RS15890: LRK54_RS15890 - LLM class flavin-dependent oxidoreductase, at 3,500,605 to 3,501,603
_RS15890
Group
Condition
LRK54
_RS15870
LRK54
_RS15875
LRK54
_RS15880
LRK54
_RS15885
LRK54
_RS15890
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
+0.1
+0.1
-0.3
-0.4
-1.7
pH
R2A_PIPES pH 4.25
+0.3
-0.1
-0.7
-0.5
-0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.2
-0.2
+0.1
-0.7
-0.1
phage
1D-T2
-0.3
+0.2
-0.2
-0.2
-0.3
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
+0.0
+0.1
+0.1
-0.6
-0.3
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
+0.1
-0.1
+0.1
-0.5
-0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-0.0
-0.1
+0.4
-0.5
-0.3
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.5
-0.2
-0.3
-0.0
+0.5
stress
R2A with lithium chloride 15.625 mM
+0.1
-0.1
+0.3
-0.7
+0.1
stress
R2A with Ferric chloride 1.5625 mM
-0.4
-0.1
+0.2
-0.3
+0.2
stress
R2A with Selective_ion_mix_1 1 X
-0.4
-0.2
+0.3
+0.2
-0.2
stress
R2A with Chloride 250 mM
-0.2
-0.1
+0.5
-0.3
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.4
+0.1
-0.5
-0.3
+0.0
stress
R2A with sulfate 250 mM
-0.3
-0.0
+0.3
-0.3
+0.1
phage
1E-T1
-0.0
+0.3
-0.5
-0.4
+0.4
phage
3C-T2
-0.2
-0.2
+0.1
-0.3
+0.4
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.0
-0.2
-0.2
-0.2
+0.6
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.5
-0.1
-0.3
-0.2
+0.1
stress
R2A with Nickel (II) chloride 0.3125 mM
+0.2
-0.2
+0.6
-0.3
-0.2
stress
R2A with Calcium chloride 125 mM
+0.2
-0.1
+0.3
-0.5
+0.2
stress
R2A with Cesium chloride 3.90625 mM
+0.2
-0.0
+0.1
-0.5
+0.4
carbon source
acetate 20 mM
+0.4
+0.1
-0.2
-0.4
+0.3
phage
phage 31.1
+0.7
+0.0
+0.1
-0.1
-0.4
stress
R2A_PIPES with Aluminum chloride 1.125 mM
+0.5
+0.2
-0.7
-0.3
+0.7
stress
R2A with chromate 0.0048828125 mM
+0.3
-0.2
+0.4
+0.3
-0.4
carbon source
a-Cyclodextrin 20 mM
+0.5
-0.1
-0.0
-0.2
+0.3
carbon source
a-Cyclodextrin 20 mM
+0.7
-0.2
+0.1
-0.5
+0.8
stress
R2A with Selective_ion_mix_1 1 X
+0.2
-0.2
+0.1
+0.5
+0.3
phage
4B-T2
+0.3
-0.2
-0.0
+0.5
+0.3
stress
R2A with Cobalt chloride 0.15625 mM
+0.8
-0.0
+0.2
+0.2
+0.2
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