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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS15815 and LRK54_RS15820 are separated by 226 nucleotides
LRK54_RS15820 and LRK54_RS15825 are separated by 52 nucleotides
LRK54_RS15825 and LRK54_RS15830 are separated by 128 nucleotides
LRK54_RS15830 and LRK54_RS15835 are separated by 21 nucleotides
LRK54_RS15815: LRK54_RS15815 - GGDEF domain-containing protein, at 3,480,279 to 3,482,063
_RS15815
LRK54_RS15820: LRK54_RS15820 - hypothetical protein, at 3,482,290 to 3,482,586
_RS15820
LRK54_RS15825: LRK54_RS15825 - GGDEF domain-containing protein, at 3,482,639 to 3,484,405
_RS15825
LRK54_RS15830: LRK54_RS15830 - M28 family metallopeptidase, at 3,484,534 to 3,486,213
_RS15830
LRK54_RS15835: LRK54_RS15835 - hypothetical protein, at 3,486,235 to 3,488,979
_RS15835
Group
Condition
LRK54
_RS15815
LRK54
_RS15820
LRK54
_RS15825
LRK54
_RS15830
LRK54
_RS15835
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.9
-2.0
-0.7
+0.1
+0.0
stress
R2A with Cesium chloride 3.90625 mM
-0.6
-1.2
-0.6
+0.1
+0.0
stress
R2A with Cesium chloride 3.90625 mM
-0.5
-0.9
-0.6
-0.1
+0.0
stress
R2A with nitrite 50 mM
-0.5
-1.0
-0.5
-0.0
-0.0
stress
R2A with nitrite 50 mM
-0.6
-1.0
-0.3
+0.1
-0.0
stress
R2A with nitrite 25 mM
-0.4
-0.9
-0.4
-0.1
-0.0
phage
phage 31.1
-0.0
-1.8
-0.0
+0.1
+0.0
r2a_control
R2A control
-0.5
-0.8
-0.6
+0.0
+0.1
stress
R2A with m-arsenite 0.078125 mM
-0.3
-1.0
-0.3
-0.0
-0.0
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.1
-1.3
-0.0
-0.1
-0.2
stress
R2A with mercury (II) chloride 0.009765625 mM
-0.6
-0.7
-0.5
+0.0
+0.1
stress
R2A with silver chloride 1 mM
-0.6
-0.8
-0.4
+0.3
-0.1
r2a_control
R2A control
-0.4
-0.7
-0.4
-0.1
+0.0
stress
R2A with Nickel (II) chloride 0.15625 mM
-0.2
-0.8
-0.6
+0.1
-0.1
stress
R2A with m-arsenite 0.0390625 mM
-0.4
-0.6
-0.5
-0.1
+0.1
stress
R2A with Calcium chloride 125 mM
-0.5
-0.7
-0.5
+0.2
+0.0
stress
R2A with m-arsenite 0.0390625 mM
-0.4
-0.9
-0.3
+0.1
-0.0
r2a_control
R2A control
-0.4
-0.6
-0.6
+0.0
+0.1
r2a_control
R2A control
-0.5
-0.7
-0.5
+0.1
-0.0
stress
R2A with selenate 31.25 mM
-0.5
-0.7
-0.4
+0.1
+0.0
r2a_control
R2A control
-0.5
-0.6
-0.4
+0.0
+0.1
r2a_control
R2A control
-0.3
-0.9
-0.3
+0.1
-0.0
pH
R2A_PIPES pH 4.25
+0.3
-1.4
-0.1
+0.1
+0.0
stress
R2A with sulfate 250 mM
-0.6
+0.5
-0.5
+0.1
+0.1
stress
R2A with copper (II) chloride 0.3125 mM
-0.3
+0.8
-0.3
-0.2
-0.0
carbon source
D-Glucose-6-Phosphate 20 mM
-0.3
+1.3
+0.0
-0.0
-0.1
phage
S3-T2
+0.1
+1.4
-0.0
+0.0
+0.1
phage
2B-T2
+0.3
+1.3
+0.1
+0.0
+0.0
phage
1A-T1
+0.2
+1.7
+0.1
-0.1
+0.0
phage
2E-T2
+0.2
+1.6
+0.1
+0.0
+0.1
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LRK54_RS15825
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