Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS15785 and LRK54_RS15790 are separated by 106 nucleotidesLRK54_RS15790 and LRK54_RS15795 are separated by 37 nucleotidesLRK54_RS15795 and LRK54_RS15800 are separated by 61 nucleotidesLRK54_RS15800 and LRK54_RS15805 are separated by 140 nucleotides LRK54_RS15785: LRK54_RS15785 - cupin domain-containing protein, at 3,475,814 to 3,476,269 _RS15785 LRK54_RS15790: LRK54_RS15790 - nodulation protein NfeD, at 3,476,376 to 3,477,755 _RS15790 LRK54_RS15795: LRK54_RS15795 - slipin family protein, at 3,477,793 to 3,478,569 _RS15795 LRK54_RS15800: LRK54_RS15800 - SAM-dependent methyltransferase, at 3,478,631 to 3,479,452 _RS15800 LRK54_RS15805: LRK54_RS15805 - hypothetical protein, at 3,479,593 to 3,479,859 _RS15805
Group Condition LRK54_RS15785 LRK54_RS15790 LRK54_RS15795 LRK54_RS15800 LRK54_RS15805
stress R2A with chromate 0.0048828125 mM -0.2 -0.3 -1.0 -0.5 +0.6
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.7 -0.1 -0.3 -0.0 -0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.1 +0.1 -1.0 +0.1 -0.3
stress R2A with Cobalt chloride 0.15625 mM -0.1 -0.1 -1.0 +0.1 +0.0
phage 3C-T2 -0.3 -0.1 -0.4 -0.4 +0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.2 -0.0 -0.8 +0.0 -0.4
stress R2A with Selective_ion_mix_1 1 X -0.2 -0.1 -0.5 -0.1 -0.0
r2a_control R2A control +0.1 -0.0 -0.4 -0.1 -0.4
stress R2A with Selective_ion_mix_1 1 X +0.1 -0.1 -0.4 -0.1 -0.3
r2a_control R2A control +0.2 -0.1 -0.2 -0.2 -0.4
stress R2A with Calcium chloride 250 mM +0.3 -0.1 -0.2 -0.1 -0.5
stress R2A with copper (II) chloride 0.15625 mM +0.2 +0.0 -0.5 -0.3 +0.0
stress R2A with bismuth(III) chloride 0.03125 mM -0.1 +0.3 -0.5 -0.2 -0.0
r2a_control R2A control +0.2 +0.0 -0.2 -0.1 -0.4
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM -0.4 +0.1 -0.2 -0.2 +0.2
stress R2A with Selective_ion_mix_1 1 X -0.6 -0.1 +0.2 -0.0 +0.1
stress R2A with beryllium sulfate tetrahydrate 1.953125 mM +0.2 -0.1 +0.3 -0.2 -0.6
stress R2A with Chloride 250 mM +0.3 +0.0 -0.2 +0.1 -0.5
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM +0.2 -0.1 +0.2 -0.3 -0.3
anaerobic Anaerobic, acetate donor; nitrate electron acceptor +0.2 +0.1 -0.5 +0.2 -0.1
carbon source a-Cyclodextrin 20 mM +0.2 +0.3 +0.0 -0.4 -0.2
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM +0.4 -0.1 -0.3 +0.2 -0.2
pH R2A_PIPES pH 4.25 +0.1 -0.1 +0.6 -0.2 -0.4
stress R2A with Selective_ion_mix_1 1 X -0.0 +0.0 -0.4 +0.0 +0.5
stress R2A with Selective_ion_mix_1 1 X +0.4 -0.1 -0.4 -0.2 +0.5
stress R2A with silver chloride 1 mM +0.5 +0.1 +0.1 -0.1 -0.3
phage 1A-T1 +0.4 +0.0 +0.3 +0.1 -0.4
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 -0.2 -0.1 +0.1 +0.1 +0.5
phage S3-T2 -0.1 +0.2 +0.5 +0.1 -0.1
phage 2B-T1 +0.2 +0.2 +0.5 +0.1 -0.1
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