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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS15735 and LRK54_RS15740 are separated by 856 nucleotides
LRK54_RS15740 and LRK54_RS15745 are separated by 169 nucleotides
LRK54_RS15745 and LRK54_RS15750 are separated by 66 nucleotides
LRK54_RS15750 and LRK54_RS15755 are separated by 134 nucleotides
LRK54_RS15735: LRK54_RS15735 - MarR family transcriptional regulator, at 3,466,283 to 3,466,750
_RS15735
LRK54_RS15740: LRK54_RS15740 - asparaginase domain-containing protein, at 3,467,607 to 3,467,894
_RS15740
LRK54_RS15745: LRK54_RS15745 - lipocalin family protein, at 3,468,064 to 3,468,603
_RS15745
LRK54_RS15750: LRK54_RS15750 - Na+/H+ antiporter, at 3,468,670 to 3,470,310
_RS15750
LRK54_RS15755: LRK54_RS15755 - ABC transporter ATP-binding protein, at 3,470,445 to 3,471,371
_RS15755
Group
Condition
LRK54
_RS15735
LRK54
_RS15740
LRK54
_RS15745
LRK54
_RS15750
LRK54
_RS15755
phage
1D-T2
-0.4
-2.2
+0.0
+0.0
-0.0
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
-0.3
-2.2
+0.1
+0.0
+0.2
no phage control
No phage control
-0.0
-1.3
-0.1
-0.1
-0.5
biofilm assay; biofilm sample
biofilm; Day1; NLDM;
-0.2
-1.6
+0.0
-0.1
-0.1
carbon source
a-Cyclodextrin 20 mM
-0.6
-0.9
-0.0
-0.1
-0.2
carbon source
D-Raffinose 20 mM
-0.4
-1.2
-0.1
+0.0
+0.1
stress
R2A with Cobalt chloride 0.078125 mM
-0.1
-1.4
+0.0
+0.1
-0.1
stress
R2A with Selective_ion_mix_1 1 X
-0.0
-1.1
+0.0
-0.3
-0.2
phage
3E-T2
-0.5
-0.5
-0.2
+0.1
-0.5
no stress control
no stress control
-0.0
-1.4
+0.1
+0.1
-0.2
phage
S5-T2
+0.2
-1.4
-0.0
-0.0
-0.2
stress
R2A with chromate 0.0048828125 mM
+0.0
-1.3
-0.1
-0.1
+0.3
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
-0.9
-0.0
-0.4
-0.1
+0.4
phage
4B-T2
+0.4
-0.8
-0.2
+0.1
-0.2
phage
2F-T1
-0.5
-0.8
+0.1
+0.1
+0.4
stress
R2A with m-arsenite 0.078125 mM
+0.5
-0.9
-0.0
+0.0
-0.1
stress
R2A with Calcium chloride 125 mM
+0.5
-0.8
+0.1
+0.0
-0.2
phage
1C-T1
-0.0
-1.1
+0.2
+0.3
+0.2
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-0.8
+0.2
+0.1
-0.0
+0.5
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.2
+0.7
-0.2
-0.4
-0.1
stress
R2A with chromate 0.0048828125 mM
+0.4
+0.5
-0.0
-0.2
-0.6
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.3
+0.8
-0.4
+0.3
-0.8
phage
phage 31.1
+0.3
+0.7
-0.1
+0.1
-0.6
phage
2F-T2
-0.2
+0.9
-0.2
+0.2
+0.1
stress
R2A with Zinc chloride 0.625 mM
+0.1
+1.1
-0.2
-0.3
+0.3
phage
1E-T2
-0.1
+0.9
-0.2
+0.2
+0.3
stress
R2A with sodium bromide 250 mM
+0.7
+1.0
+0.0
-0.1
-0.3
stress
R2A with lead(II) chloride 0.625 mM
+0.5
+0.9
+0.2
+0.0
-0.3
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
+0.3
+1.5
-0.0
-0.1
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
+1.6
+0.1
+0.1
-0.2
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