Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS15690 and LRK54_RS15695 are separated by 107 nucleotidesLRK54_RS15695 and LRK54_RS15700 are separated by 19 nucleotidesLRK54_RS15700 and LRK54_RS15705 are separated by 45 nucleotidesLRK54_RS15705 and LRK54_RS15710 are separated by 125 nucleotides LRK54_RS15690: LRK54_RS15690 - DksA/TraR family C4-type zinc finger protein, at 3,458,708 to 3,458,974 _RS15690 LRK54_RS15695: LRK54_RS15695 - hypothetical protein, at 3,459,082 to 3,459,753 _RS15695 LRK54_RS15700: LRK54_RS15700 - DMT family transporter, at 3,459,773 to 3,460,738 _RS15700 LRK54_RS15705: LRK54_RS15705 - sulfur transferase domain-containing protein, at 3,460,784 to 3,461,338 _RS15705 LRK54_RS15710: LRK54_RS15710 - alkylphosphonate utilization protein, at 3,461,464 to 3,461,808 _RS15710
Group Condition LRK54_RS15690 LRK54_RS15695 LRK54_RS15700 LRK54_RS15705 LRK54_RS15710
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -0.9 -1.2 +0.1 N.D. +0.2
stress R2A with bismuth(III) chloride 0.03125 mM +0.4 -1.4 -0.1 N.D. -0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; +0.0 -0.9 -0.2 N.D. -0.1
biofilm assay; planktonic sample planktonic; Day1; NLDM; +0.0 -0.8 -0.2 N.D. -0.1
phage 2E-T2 -0.1 -0.4 -0.4 N.D. -0.1
stress R2A with Nickel (II) chloride 0.3125 mM -0.2 -0.3 -0.2 N.D. -0.3
stress R2A with Cobalt chloride 0.15625 mM -0.1 -0.6 +0.1 N.D. -0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.2 -1.1 +0.3 N.D. -0.2
carbon source a-Cyclodextrin 20 mM -0.3 -0.4 +0.3 N.D. -0.2
stress R2A_PIPES with Nickel (II) chloride 424 uM -0.3 -0.3 +0.1 N.D. +0.2
stress R2A with chromate 0.0048828125 mM +0.3 -0.5 +0.1 N.D. -0.2
phage 4E-T1 +0.6 -0.2 -0.2 N.D. -0.2
r2a_control R2A control +0.3 -0.4 +0.3 N.D. -0.2
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.4 +0.2 +0.2 N.D. +0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.6 -0.5 -0.0 N.D. +0.2
phage 1A-T1 +0.2 +0.4 -0.2 N.D. -0.0
stress R2A with chromate 0.0048828125 mM -0.2 +0.4 +0.4 N.D. -0.1
phage 2F-T1 +0.6 -0.2 +0.1 N.D. +0.0
stress R2A with arsenate 31.25 mM +0.2 +0.3 +0.2 N.D. -0.2
stress R2A with Other_metal_mix 1 X -0.3 +0.7 +0.1 N.D. +0.0
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM +0.4 +0.3 +0.1 N.D. -0.2
r2a_control R2A control +0.2 +0.7 -0.1 N.D. -0.1
phage 1E-T2 +0.5 +0.2 +0.2 N.D. -0.2
stress R2A_PIPES with Zinc chloride 640 uM +0.4 +0.5 +0.0 N.D. -0.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.0 +0.6 -0.1 N.D. +0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.5 +0.1 +0.3 N.D. -0.1
phage S5-T1 +0.3 +0.6 -0.1 N.D. +0.0
r2a_control R2A control +0.2 +0.7 +0.1 N.D. -0.1
r2a_control R2A control +0.4 +0.3 +0.2 N.D. +0.1
phage S3-T2 +0.5 +0.6 -0.0 N.D. -0.1
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