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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS15625 and LRK54_RS15630 are separated by 3 nucleotides
LRK54_RS15630 and LRK54_RS15635 are separated by 12 nucleotides
LRK54_RS15635 and LRK54_RS15640 overlap by 11 nucleotides
LRK54_RS15640 and LRK54_RS15645 overlap by 4 nucleotides
LRK54_RS15625: LRK54_RS15625 - 5-demethoxyubiquinol-8 5-hydroxylase UbiM, at 3,446,706 to 3,447,929
_RS15625
LRK54_RS15630: LRK54_RS15630 - HlyD family secretion protein, at 3,447,933 to 3,448,934
_RS15630
LRK54_RS15635: LRK54_RS15635 - DUF1656 domain-containing protein, at 3,448,947 to 3,449,147
_RS15635
LRK54_RS15640: LRK54_RS15640 - FUSC family protein, at 3,449,137 to 3,451,284
_RS15640
LRK54_RS15645: LRK54_RS15645 - MarR family transcriptional regulator, at 3,451,281 to 3,451,775
_RS15645
Group
Condition
LRK54
_RS15625
LRK54
_RS15630
LRK54
_RS15635
LRK54
_RS15640
LRK54
_RS15645
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
-0.6
-0.8
-0.6
-0.4
-1.0
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
-0.1
-1.5
-0.1
-0.4
-0.8
stress
R2A with silver chloride 1 mM
+0.0
+0.2
-0.2
-0.2
-2.2
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.6
+0.1
-0.7
+0.2
-1.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.5
-0.7
-0.5
-0.3
-0.2
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
-0.2
-0.6
-0.1
-0.0
-0.7
r2a_control
R2A control
-0.1
-0.1
-0.2
-0.1
-1.0
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
-0.4
-0.3
+0.1
-0.2
-0.7
stress
R2A with Zinc chloride 0.625 mM
-0.4
+0.4
-0.3
-0.2
-0.8
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.2
+0.1
-1.2
-0.1
-0.4
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.5
-0.3
-1.3
+0.3
-0.6
stress
R2A with mercury (II) chloride 0.009765625 mM
-0.1
+0.1
-0.1
+0.1
-1.3
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
+0.2
-0.2
+0.0
+0.1
-1.4
phage
S5-T2
+0.2
+0.1
-0.2
+0.2
-1.4
stress
R2A with Uranyl acetate 2.5 mM
-0.2
+0.1
+0.1
-0.0
-1.3
stress
R2A with silver chloride 1 mM
-0.3
-0.0
+0.2
+0.1
-1.1
phage
SA-T2
+0.1
-0.1
+0.0
+0.2
-1.3
stress
R2A with selenate 31.25 mM
-0.1
-0.1
+0.3
-0.0
-1.1
stress
R2A with Selective_ion_mix_1 1 X
+0.3
-0.1
-0.9
+0.1
-0.3
stress
R2A with Barium chloride 1.25 mM
-0.1
+0.2
+0.3
+0.0
-1.1
phage
2E-T1
+0.4
-0.4
-0.2
+0.2
-0.6
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.2
+0.1
-0.3
+0.1
-0.8
r2a_control
R2A control
+0.1
+0.1
+0.5
-0.1
-1.0
stress
R2A with Nickel (II) chloride 0.3125 mM
+0.4
+0.1
+0.2
+0.2
-0.7
stress
R2A with m-arsenite 0.078125 mM
+0.2
+0.1
+0.4
+0.3
-0.7
stress
R2A with Zinc chloride 0.3125 mM
+0.2
+0.2
+0.6
+0.3
-0.7
phage
4E-T2
+0.8
-0.3
+0.2
+0.1
-0.1
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.3
+0.3
+0.4
+0.2
+0.3
biofilm assay; biofilm sample
biofilm; Day1; NLDM;
+0.6
+0.1
+0.2
+0.1
+0.5
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.5
+0.4
-0.0
+0.3
+0.7
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