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Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS15410 and LRK54_RS15415 are separated by 18 nucleotides
LRK54_RS15415 and LRK54_RS15420 are separated by 316 nucleotides
LRK54_RS15420 and LRK54_RS15425 are separated by 71 nucleotides
LRK54_RS15425 and LRK54_RS15430 are separated by 186 nucleotides
LRK54_RS15410: LRK54_RS15410 - FGGY-family carbohydrate kinase, at 3,402,698 to 3,404,257
_RS15410
LRK54_RS15415: LRK54_RS15415 - helix-turn-helix domain-containing protein, at 3,404,276 to 3,405,451
_RS15415
LRK54_RS15420: LRK54_RS15420 - DUF6448 family protein, at 3,405,768 to 3,406,397
_RS15420
LRK54_RS15425: LRK54_RS15425 - DUF6404 family protein, at 3,406,469 to 3,406,828
_RS15425
LRK54_RS15430: LRK54_RS15430 - lipocalin-like domain-containing protein, at 3,407,015 to 3,407,536
_RS15430
Group
Condition
LRK54
_RS15410
LRK54
_RS15415
LRK54
_RS15420
LRK54
_RS15425
LRK54
_RS15430
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.3
+0.1
-0.1
-0.5
-0.6
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.5
-0.0
-0.3
-0.3
-0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.1
-0.2
-0.3
-0.2
-0.3
stress
R2A_PIPES with Nickel (II) chloride 424 uM
-0.3
-0.2
-0.1
-0.0
-0.3
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
-0.2
-0.3
-0.5
+0.2
-0.1
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.1
-0.0
-0.3
-0.2
-0.3
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
-0.2
-0.1
+0.2
+0.0
-0.7
stress
R2A with chromate 0.0048828125 mM
-0.1
-0.0
-0.2
+0.3
-0.6
phage
2E-T1
-0.2
-0.1
-0.1
+0.2
-0.5
phage
1A-T1
+0.1
+0.0
-0.0
-0.3
-0.3
stress
R2A with nitrite 25 mM
-0.2
-0.1
+0.3
+0.0
-0.5
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
+0.1
-0.1
-0.2
+0.1
-0.3
phage
2F-T2
-0.2
-0.0
-0.2
-0.2
+0.2
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
+0.0
+0.1
+0.3
-0.2
-0.5
stress
R2A with Cobalt chloride 0.15625 mM
+0.1
+0.0
-0.1
-0.4
+0.3
biofilm assay; planktonic sample
planktonic; Day2; NLDM;
-0.1
-0.0
+0.1
-0.2
+0.4
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
-0.1
-0.2
-0.1
+0.1
+0.5
stress
R2A with chromate 0.0048828125 mM
-0.1
+0.1
-0.2
+0.1
+0.3
stress
R2A with nitrite 50 mM
-0.1
-0.1
+0.2
-0.1
+0.3
phage
S3-T1
+0.2
-0.1
-0.2
+0.1
+0.2
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.3
+0.3
-0.0
+0.0
+0.2
phage
4B-T1
+0.1
-0.1
-0.2
+0.3
+0.2
stress
R2A with Strontium chloride 3.90625 mM
-0.1
-0.1
+0.2
+0.0
+0.4
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
-0.2
+0.0
+0.2
+0.6
stress
R2A with Cobalt chloride 0.078125 mM
-0.1
-0.0
-0.1
-0.0
+0.6
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-0.2
-0.0
-0.0
+0.2
+0.5
phage
4B-T2
-0.2
+0.0
+0.2
+0.1
+0.5
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
-0.1
+0.0
+0.2
+0.0
+0.5
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.1
+0.0
+0.2
-0.2
+0.6
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
+0.2
-0.0
+0.4
+0.1
+0.5
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